New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6157155	38 (0.840)	4 (0.090)	4/236	NT	9.3%	coding (539/1068 nt)	PP_5400	hypothetical protein
	?	NC_002947	= 6157195	42 (0.980)					coding (579/1068 nt)	PP_5400	hypothetical protein

ACAGAAGGTGGGAATTGGTTAGGCCTGCGGAATCTGCTGCAAGCATGTTGGCGCCATGGCGTACCTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGAAATATTGATCGACGAGACGTTGGGAGAGCAGTCGTATGCACTGGACGATCCC  >  NC_002947/6157049‑6157342                                                                                                                                                    |                                                                                                                                                    aCAGAAGGTGGGAATTGGTTAGGCCTGCGGAATCTGCTGCAAGCATGTTGGCGCCATGGCGTACCTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑Tatc                                                                                                                                                  >  1:1102076‑M2/1‑147 (MQ=255) aCAGAAGGTGGGAATTGGTTAGGCCTGCGGAATCTGCTGCAAGCATGTTGGCGCCATGGCGTACCTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑Tatc                                                                                                                                                  >  1:195707‑M2/1‑147 (MQ=255)   aGAAGGTGGGAATTGGTTAGGCCTGCGGAATCTGCTGCAAGCATGTTGGCGCCATGGCGTACCTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑Tatctt                                                                                                                                                >  2:189035‑M2/1‑145 (MQ=255)   aGAAGGTGGGAATTGGTTAGGCCTGCGGAATCTGCTGCAAGCATGTTGGCGCCATGGCGTACCTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑Tatctt                                                                                                                                                >  1:455035‑M2/1‑145 (MQ=255)      aGGTGGGAATTGGTTAGGCCTGAGGAATCAGCCGAAAGCACGTTGGCGCAATGGCGTACCTATGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTc                                                                                                                                             <  2:253639/150‑1 (MQ=255)              aTTGGTTAGGCCTGCGGAATCTGCTGCAAGCATGTTGGCGCCATGGGGTACCTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAGGATAGATGGCATGGTCACCATGTTCGAAGGGCAACCTGTCAT‑TATCTTGTCCaaaaaaa                                                                                                                                     <  1:502013/150‑1 (MQ=255)                  gTTAGGCCTGCGGAATCTGCTGCAAGCATGTTGGCGCCATGGCGTACCTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCaa                                                                                                                                 <  1:213601/150‑1 (MQ=255)                              gAATCTGCTGCAAGCATGTTGGCGCCATGGCGTACCTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑Tatc                                                                                                                                                  >  2:322342‑M2/1‑118 (MQ=255)                              gAATCTGCTGCAAGCATGTTGGCGCCATGGCGTACCTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑Tatc                                                                                                                                                  <  1:322342‑M2/121‑4 (MQ=255)                                aTCTGCTGCAAGCATGTTGGCGCCATGGCGTACCTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGc                                                                                                                   >  1:366923/1‑150 (MQ=255)                                 tCTGCTGCAAGCATGTTGGCGCCATGGCGTACCTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCa                                                                                                                  >  1:480377/1‑150 (MQ=255)                                   tgctgcAAGCATGTTGGCGCCATGGCGTACCTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGAGCCTGGCAAt                                                                                                                >  2:782147/1‑150 (MQ=255)                                        cAAGCATGTTGGCGCCATGGCGTACTTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTtc                                                                                                           <  2:1106967/150‑1 (MQ=255)                                        cAAGCATGTTGGCGCCATGGCGTACCTGTGATCTATCTGGACGAGGTGTGCGAGGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTtc                                                                                                           <  1:1152278/150‑1 (MQ=255)                                        cAAGCATGTTGGCGCCATGGCGTACCTGTGATCCATATGGACGAGGTGTGCGACAGATTATCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTtc                                                                                                           <  1:801626/150‑1 (MQ=255)                                         aaGCATGTTGGCGCCATGGCGTACCTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTtca                                                                                                          <  2:480377/150‑1 (MQ=255)                                            cATGTTGGCGCCATGGCGTACCTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGGCGTGGGCCTGGCAATCCTtcatca                                                                                                       >  1:790415/1‑150 (MQ=255)                                                  ggCGCCATAGCGTACCTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTc                                                                                                 >  2:81693/1‑150 (MQ=255)                                                        aTGGCGTACCTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACgaga                                                                                           <  1:241151/150‑1 (MQ=255)                                                             gTACCTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGa                                                                                      <  1:81693/150‑1 (MQ=255)                                                               tccTGTTATCTATCTGGATAAGGTGTTCGAAGGACTACCCAAGATGGATGGCATGGTCACCATTTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGaca                                                                                    <  2:510157/149‑1 (MQ=255)                                                                 cTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑Tatc                                                                                                                                                  >  1:417746‑M2/1‑83 (MQ=255)                                                                 cTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑Tatc                                                                                                                                                  <  2:417746‑M2/86‑4 (MQ=255)                                                                      atctatctGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTTGGGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCt                                                                             >  1:565431/1‑150 (MQ=255)                                                                       tctatctGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCtt                                                                            >  1:489819/1‑150 (MQ=255)                                                                       tctatctGGACGAGGTGTGCGAAGGACTACCCAAGATGGAGGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAACAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCtt                                                                            <  1:917678/150‑1 (MQ=255)                                                                          atctGGACGAGGTGTGCGAAGGACTACCCAATATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAg                                                                         <  1:165953/150‑1 (MQ=255)                                                                           tctGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAgg                                                                        >  2:382753/1‑150 (MQ=255)                                                                                aCGAGGTGTGCGAAGGACTCCCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCata                                                                   <  2:793808/150‑1 (MQ=255)                                                                                  gAGGTGTGCGAACGACTACCCAAGATGGATGGCATGGCCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATc                                                                 <  1:706364/150‑1 (MQ=255)                                                                                                  tACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGAAatat                                                 >  1:1189358/1‑150 (MQ=255)                                                                                                   aCCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGAAATAtt                                                <  1:382753/150‑1 (MQ=255)                                                                                                    cccAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑Tatcttgggtagtccttcgcacacctcgtccagatagatcacaggtacgccatggcgccaacatgcttgcagcaga                                                                          <  2:976280‑M2/123‑76 (MQ=255)                                                                                                    cccAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑Tatcttgggtagtccttcgcacacctcgtccagatagatcacaggtacgccatggcgccaacatgcttgcagcaga                                                                          >  1:976280‑M2/1‑48 (MQ=255)                                                                                                    cccAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCatcatc                                                                                                     >  1:418042/1‑96 (MQ=255)                                                                                                    cccAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCatcatc                                                                                                     <  2:418042/96‑1 (MQ=255)                                                                                                    cccAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGaaa                                                    >  2:1134/1‑145 (MQ=255)                                                                                                    cccAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGaaa                                                    <  1:1134/145‑1 (MQ=255)                                                                                                         gatggatgGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑Tatcttgggtagtccttcgcacacctcgtccagatagatcacaggtacgccatggcgccaacatgcttgcagcagattccgcaggcctaaccaattcccaccttctgt                                          <  2:1133194‑M2/150‑108 (MQ=255)                                                                                                          atggatggCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCGTCATCATCTCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGAAATATTGATcgac                                         <  2:456114/150‑1 (MQ=255)                                                                                                          atggatggCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGCGCCTGTCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGAAATATTGATcgac                                         <  2:1189358/150‑1 (MQ=255)                                                                                                              atggCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCAc                                                                                               <  2:817670/92‑1 (MQ=255)                                                                                                              atggCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCAc                                                                                               >  1:817670/1‑92 (MQ=255)                                                                                                               tggCATGGTCACCATGTTCGAAGGGCGACCTGTCATCCatcttgggtagtccttcgcacacctcgtccagatagatcacaggtacgccatggcgccaacatgcttgcagcagattccgcaggcctaaccaattcccaccttctgttccaa                                     <  1:49352‑M2/150‑113 (MQ=255)                                                                                                                   aTGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGAAATATTGATCGACGAGACGTTg                                <  2:790415/150‑1 (MQ=255)                                                                                                                      gTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGAACGGAAACTGCGCTTTAGGCCATATCGACCTAGATGAAATATTGATCGACGAGACGTTGGga                             >  2:765347/1‑150 (MQ=255)                                                                                                                       tCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGAAATATTGATCGACGAGACGTTGGgag                            >  1:894886/1‑150 (MQ=255)                                                                                                                        cACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGATCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGAAATATTGATCGACGAGACGTTGGgaga                           <  1:427578/150‑1 (MQ=255)                                                                                                                           cATGTTCGAAGGGCGACCTGTCAT‑TATATTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGAAATATTGATCGACGAGACGTTGGGAGAGCa                        >  1:185148/1‑150 (MQ=255)                                                                                                                               ttCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGAAATATTGATCGACGAGACGTTGGGAGAGCAGTCg                    >  1:1200441/1‑150 (MQ=255)                                                                                                                                             tGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGAAATAtt                                                >  2:1133256/1‑108 (MQ=255)                                                                                                                                             tGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGAAATAtt                                                <  1:1133256/108‑1 (MQ=255)                                                                                                                                             tGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGAAATATTGATCGACGAGACGTTGGGAGAGCAGTCGTATGCACTGGACGa      <  2:366923/150‑1 (MQ=255)                                                                                                                                              gTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGAAATATTGATCGACGAGACGTTGGGAGAGCAGTCGTATGCACTg           <  2:389019/144‑1 (MQ=255)                                                                                                                                              gTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGAAATATTGATCGACGAGACGTTGGGAGAGCAGTCGTATGCACTg           >  1:389019/1‑144 (MQ=255)                                                                                                                                                 aT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGAAATATTGATCGACGAGACGTTGGGAGAGCAGTCGTATGCACTGGACGATccc  >  1:71246/1‑150 (MQ=255)                                                                                                                                                 aT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGAAATATTGATCGACGAGACGTTGGGAGAGCAGTCGTATGCACTGGACGATccc  >  2:211221/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                    ACAGAAGGTGGGAATTGGTTAGGCCTGCGGAATCTGCTGCAAGCATGTTGGCGCCATGGCGTACCTGTGATCTATCTGGACGAGGTGTGCGAAGGACTACCCAAGATGGATGGCATGGTCACCATGTTCGAAGGGCGACCTGTCAT‑TATCTTGTCCAAAAAAAGCAAGTCGTGGGCCTGGCAATCCTTCATCATCGCTCACGAGATCGGACACTGCGCTTTAGGCCATATCGACCTAGATGAAATATTGATCGACGAGACGTTGGGAGAGCAGTCGTATGCACTGGACGATCCC  >  NC_002947/6157049‑6157342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.