New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4886181 =	29 (0.880)	6 (0.230)	5/208	2.8	21.9%	intergenic (+15/+108)	PP_4295/PP_4296	TetR family transcriptional regulator/hypothetical protein
	?	NC_002947	4886268 =	20 (0.780)					intergenic (+102/+21)	PP_4295/PP_4296	TetR family transcriptional regulator/hypothetical protein

CTATGCCGACTTCGACTGGCAGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCA  >  NC_002947/4886037‑4886307                                                                                                                                                 |                                                                                                                               cTATGCCGACTTCGACTGGCAGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTc                                                                                                                           >  1:227247/1‑150 (MQ=255)    gacggcaaggtgctgggtgccgtggggatcagcggcgatacgtcggatatcgacgagcagtgtgcgatcagtgcgatcgaggaggtggggctgcgggcagatgccggggtagcggcctaaatctgtattgcctgttctggcCCATTcgcg                                                                                                                        <  1:554‑M1/9‑1 (MQ=255)     acggcaaggtgctgggtgccgtggggatcagcggcgatacgtcggatatcgacgagcagtgtgcgatcagtgcgatcgaggaggtggggctgcgggcagatgccggggtagcggcctaaatctctattgcctgttctggcCCATTCGCgg                                                                                                                       >  1:312718‑M1/141‑150 (MQ=255)           ttCGACTGGCAGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGCCCATTCGCGGGCAAGc                                                                                                                 >  2:556345/1‑150 (MQ=255)                 tgggtgccgtggggatcagcggcgatacgtcggatatcgacgagcagtgtgcgatcagtgcgatcgaggaggttgggctgcgggcagatgccggggtagcggcctaaatctctattgcctgttctggcCCATTCGcgggcaagaccacta                                                                                                           <  2:580315‑M1/22‑8 (MQ=255)                  gggtgccgtggggatcagcggcgatacgtcggatatcgacgagcagtgtgcgatcagtgcgatcgaggaggtggggctgcgggcagatgccggggtagcggcctaaatctctattgcctgttctggcCCATTCGCGCGCAAGCCCGCTcc                                                                                                          >  2:74846‑M1/128‑150 (MQ=255)                    gtgccgtggggatcagcggcgatacgtcggatatcgacgagcagtgtgcgatcagtgcgatcgaggaggtggggctgcgggcagatgccggggtagcggcctaaatctctattgcctgttctggcCCATTCGCGGGCAAGGCCGCTCCca                                                                                                        <  2:350440‑M1/25‑1 (MQ=255)                           cTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGGCAGCCTGAGGCAGCCTGAACCATCTAGAAGGGCCATTCGCGGGCAAGCCCGCACCCAGAGGaac                                                                                                 >  1:360425/1‑148 (MQ=255)                                              cAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAACCCCGCTCCCACAGGATCACCACATGCCTGAAGGTtg                                                                              >  2:810580/1‑150 (MQ=255)                                                      ccGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTcc                                                                      >  2:234695/1‑150 (MQ=255)                                                            gTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAACCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTgg                                                                >  1:350440/1‑150 (MQ=255)                                                             tGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTggg                                                               >  1:84155/1‑150 (MQ=255)                                                               aTTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTtgtg                                                                            <  2:136608/135‑1 (MQ=255)                                                               aTTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTtgtg                                                                            >  1:136608/1‑135 (MQ=255)                                                                   tGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCggg                                                         >  2:362219/1‑150 (MQ=255)                                                                   gcgatcagtgcgatcgaggaggtggggctgcgggcagatgccggggtagcggcctaaatctctattgcctgttctggcCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGa                                                              <  1:578494‑M1/67‑1 (MQ=255)                                                                   gcgatcagtgcgatcgaggaggtggggctgcgggcagatgccggggtagcggcctaaatctctattgcctgttctggcCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGa                                                              >  2:578494‑M1/79‑145 (MQ=255)                                                                           tgcgatcgaggaggtggggctgcgggcagatgccggggtagcggcctaaatctctattgcctgttctggcCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCtgt                                                                  <  2:128882‑M1/63‑1 (MQ=255)                                                                           tgcgatcgaggaggtggggctgcgggcagatgccggggtagcggcctaaatctctattgcctgttctggcCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCtgt                                                                  >  1:128882‑M1/71‑133 (MQ=255)                                                                                  gaCCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCGCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGGCCCTGTGGGAGCGGGCTTGCCCGCGAATgg                                          <  1:325531/150‑1 (MQ=255)                                                                                    ccATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGc                                        <  1:234695/150‑1 (MQ=255)                                                                                            cGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAg                                <  1:362219/150‑1 (MQ=255)                                                                                            cGTATGGTCTTGAAAGGTTATGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAAGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAg                                <  2:360425/150‑1 (MQ=255)                                                                                             gTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAgg                               <  2:505324/150‑1 (MQ=255)                                                                                                  gggcagatgccggggtagcggcctaaatctctattgcctgttctggcCCATTCGCGGGCAAGCCCGCTcc                                                                                                          >  2:530479‑M1/48‑70 (MQ=255)                                                                                                  gggcagatgccggggtagcggcctaaatctctattgcctgttctggcCCATTCGCGGGCAAGCCCGCTcc                                                                                                          <  1:530479‑M1/23‑1 (MQ=255)                                                                                                  gTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATa                          >  1:723573/1‑150 (MQ=255)                                                                                                      tGAAAGGTCGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAgaga                      <  2:84155/150‑1 (MQ=255)                                                                                                        aaaGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGAtt                    <  2:227247/150‑1 (MQ=255)                                                                                                         aaGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAgg                               >  2:363003/1‑138 (MQ=255)                                                                                                         aaGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAgg                               <  1:363003/138‑1 (MQ=255)                                                                                                          aGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTa                  >  1:279313/1‑150 (MQ=255)                                                                                                            gTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAgg                <  2:279313/150‑1 (MQ=255)                                                                                                               gtgAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCg             >  1:150814/1‑150 (MQ=255)                                                                                                                     cTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTAccc       <  2:150814/150‑1 (MQ=255)                                                                                                                        aGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGc                                                                                        <  2:106344/66‑1 (MQ=255)                                                                                                                        aGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGc                                                                                        >  1:106344/1‑66 (MQ=255)                                                                                                                          gCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCa  <  1:625269/150‑1 (MQ=255)                                                                                                                                     gcctgttctggcCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCtgt                                                                  <  1:804450‑M1/63‑1 (MQ=255)                                                                                                                                     gcctgttctggcCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCtgt                                                                  >  2:804450‑M1/13‑75 (MQ=255)                                                                                                                                             aGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCggg                                                         >  1:760525/1‑76 (MQ=255)                                                                                                                                             aGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCggg                                                         <  2:760525/76‑1 (MQ=255)                                                                                                                                                 |                                                                                                                               CTATGCCGACTTCGACTGGCAGATTTCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCA  >  NC_002947/4886037‑4886307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.