New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4886181 =	29 (0.880)	6 (0.230)	5/208	2.8	21.9%	intergenic (+15/+108)	PP_4295/PP_4296	TetR family transcriptional regulator/hypothetical protein
	?	NC_002947	4886268 =	20 (0.780)					intergenic (+102/+21)	PP_4295/PP_4296	TetR family transcriptional regulator/hypothetical protein

CCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTGCCGTC  >  NC_002947/4886120‑4886408                                                                                                                                                     |                                                                                                                                             ccATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGc                                                                                                                                             <  1:234695/150‑1 (MQ=255)         cGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAg                                                                                                                                     <  1:362219/150‑1 (MQ=255)         cGTATGGTCTTGAAAGGTTATGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAAGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAg                                                                                                                                     <  2:360425/150‑1 (MQ=255)          gTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAgg                                                                                                                                    <  2:505324/150‑1 (MQ=255)               gTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATa                                                                                                                               >  1:723573/1‑150 (MQ=255)                   tGAAAGGTCGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAgaga                                                                                                                           <  2:84155/150‑1 (MQ=255)                     aaaGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGAtt                                                                                                                         <  2:227247/150‑1 (MQ=255)                      aaGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAgg                                                                                                                                    <  1:363003/138‑1 (MQ=255)                      aaGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAgg                                                                                                                                    >  2:363003/1‑138 (MQ=255)                       aGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTa                                                                                                                       >  1:279313/1‑150 (MQ=255)                         gTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAgg                                                                                                                     <  2:279313/150‑1 (MQ=255)                            gtgAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCg                                                                                                                  >  1:150814/1‑150 (MQ=255)                                  cTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTAccc                                                                                                            <  2:150814/150‑1 (MQ=255)                                       gCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCa                                                                                                       <  1:625269/150‑1 (MQ=255)                                                                        GCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAg                                                                                                                                     <  1:46181‑M1/87‑1 (MQ=255)                                                                        GCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAg                                                                                                                                     >  2:46181‑M1/1‑87 (MQ=255)                                                                         CAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGc                                                                                                  <  1:669726‑M1/121‑1 (MQ=255)                                                                         CAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGc                                                                                                  >  2:669726‑M1/1‑121 (MQ=255)                                                                            GCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCg                                                                  <  2:475918‑M1/150‑1 (MQ=255)                                                                                  tcccacagggactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGc                                                                 <  1:578494‑M2/78‑1 (MQ=255)                                                                                  tcccacagggactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGc                                                                 >  2:578494‑M2/68‑145 (MQ=255)                                                                                     CACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCt                                                         >  2:723573‑M1/1‑150 (MQ=255)                                                                                      acagggactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGc                                                                                                                                   <  1:804450‑M2/12‑1 (MQ=255)                                                                                      acagggactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGc                                                                                                                                   >  2:804450‑M2/64‑75 (MQ=255)                                                                                      acagggactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCa                                                                         <  2:128882‑M2/70‑1 (MQ=255)                                                                                      acagggactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCa                                                                         >  1:128882‑M2/64‑133 (MQ=255)                                                                                             caccacATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGata                                                 >  2:554/1‑150 (MQ=255)                                                                                                       cTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTAt                                       >  1:10104/1‑150 (MQ=255)                                                                                                             gTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATcgccgc                                 <  1:810580/150‑1 (MQ=255)                                                                                                                  ggAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATc                            >  2:389516/1‑150 (MQ=255)                                                                                                                      tCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACGGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCa                        >  1:580315/1‑150 (MQ=255)                                                                                                                       cccTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCAc                       <  1:475918/150‑1 (MQ=255)                                                                                                                            tgggagcggccttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCAc                  <  2:350440‑M2/125‑1 (MQ=255)                                                                                                                              ggagcgggcttgcgcgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCAccc                >  2:74846‑M2/24‑150 (MQ=255)                                                                                                                              ggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGccc                                                                                                >  2:530479‑M2/24‑70 (MQ=255)                                                                                                                              ggagcgggcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGccc                                                                                                <  1:530479‑M2/47‑1 (MQ=255)                                                                                                                               tagtggtcttgcccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCAACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCa               <  2:580315‑M2/128‑1 (MQ=255)                                                                                                                                           ccgcgaatggGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTGCCGt   >  1:312718‑M2/11‑150 (MQ=255)                                                                                                                                            cgcgaatggGCCAGAACAGGCAATACAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTGCCGTc  <  1:554‑M2/141‑1 (MQ=255)                                                                                                                                                     gCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATctca                                                                         >  2:81179/1‑67 (MQ=255)                                                                                                                                                     gCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCTCa                                                                         <  1:81179/70‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                             CCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGTCGATATCCGACGTATCGCCGCTGATCCCCACGGCACCCAGCACCTTGCCGTC  >  NC_002947/4886120‑4886408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.