New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1194573 = | 13 (0.800) | 3 (0.190) | 3/250 | NT | 18.9% | coding (706/1653 nt) | uxpA | lipoprotein UxpA |
? | NC_002947 | 1194616 = | 13 (0.820) | coding (749/1653 nt) | uxpA | lipoprotein UxpA |
CCACAGGTCCTGACCACGGGCGCACAACAGCACGTCGATTTGCGGCACCCGTTCAGCCAGCCACAGGCCGGGGCCCGTGCCTGCATCGGCCATGGCCACCACCAGGTCAGCCTCGTGCCGGGCTTGCTCGAATACCGGCAGCAGAGACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1194722‑1194573 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTC > NC_002947/1194616‑1194711 CCACAGGTCCTGACCACGGGCGCACAACAGCACGTCGATTTGCGGCACCCGTTCAGCCAGCCACAGGCCGGGGCCCGTGCCTGCATCGGCCATGGCCACCACCAGGTCAGCCTCGTGCCGGGCTTGCTCGAATACCGGCAGCAGAGACTG > 2:69183/1‑150 CACCACCAGGTCAGCCTCGTGCCGGGCTTGCTCGAATACCGGCAGCAGAGACTAACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGACCCGGCCTGTGGCTGGCTGAACGGGGGCCGGAAATCGACGTGCTGTCGTGGGCGCGTGGTa > 2:168816/1‑149 CACCAGGTCAGCCTCGTGCCGGGCTTGCTCGAATACCGGCAGCAGAGACTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTG < 1:256334/144‑1 CACCAGGTCAGCCTCGTGCCGGGCTTGCTCGAATACCGGCAGCAGAGACTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTG > 2:256334/1‑144 CCACAGGTCCTGACCACGGGCGCACAACAGCACGTCGATTTGCGGCACCCGTTCAGCCAGCCACAGGCCGGGGCCCGTGCCTGCATCGGCCATGGCCACCACCAGGTCAGCCTCGTGCCGGGCTTGCTCGAATACCGGCAGCAGAGACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1194722‑1194573 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTC > NC_002947/1194616‑1194711 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |