New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1194573 =	13 (0.800)	3 (0.190)	3/250	NT	18.9%	coding (706/1653 nt)	uxpA	lipoprotein UxpA
	?	NC_002947	1194616 =	13 (0.820)					coding (749/1653 nt)	uxpA	lipoprotein UxpA

GACGCACAACGCCAGGCACTGGGTGTGCAAGCCCTGCACGTTTTCGAGCGCGGCGGTGCCCGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGG  >  NC_002947/1194444‑1194722                                                                                                                                  |                                                                                                                                                      gACGCACAACGCCAGGCACTGGGTGTGCAAGCCCTGCACGTTTTCGAGCGCGGCGGTGCCCGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTc                                                                                                                                   >  1:309484/1‑150 (MQ=255)      acaACGCCAGGCACTGGGTGTGCAAGCCCTGCACGTTTTCGAGCGCGGCGGTGCCCGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCa                                                                                                                              >  2:426961/1‑150 (MQ=255)             cAGGCACTGGGTGTGCAAGCCCTGCACGTTTTCGAGCGCGGCGGTGCCCGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCgg                                                                                                                       >  1:340094/1‑150 (MQ=255)                                  taccacgcgcccacgacagcacgtcgatttccggcccccgttcagccagccacaggccgggtcccgtgcctgcatcggccatggccaccaccaggtTAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCtggtggtg                                                                                                  >  2:168816‑M1/97‑150 (MQ=255)                                     cacgggcgcacaacagcacgtcgatttgcggcacccgttcagccagccacaggccggggcccgtgcctgcatcggccatggccaccaccaggtCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCtggtg                                                                                                     <  1:256334‑M1/51‑1 (MQ=255)                                     cacgggcgcacaacagcacgtcgatttgcggcacccgttcagccagccacaggccggggcccgtgcctgcatcggccatggccaccaccaggtCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCtggtg                                                                                                     >  2:256334‑M1/94‑144 (MQ=255)                                        gTTTTCGAGCGCGGCGGTGCCCGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATg                                                                                            <  2:320997/150‑1 (MQ=255)                                                                               gTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCtggtggtg                                                                                                  >  1:316688/1‑105 (MQ=255)                                                                               gTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCtggtggtg                                                                                                  <  2:316688/105‑1 (MQ=255)                                                                                  accgaccCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCa                                                                                                                                                      >  1:294497/1‑50 (MQ=255)                                                                                  accgaccCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCa                                                                                                                                                      <  2:294497/50‑1 (MQ=255)                                                                                                ccAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGa                                    >  2:127454/1‑150 (MQ=255)                                                                                                 aaGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGAc                                   <  1:426961/149‑1 (MQ=255)                                                                                                         gAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCtgtt                           >  1:69183/1‑150 (MQ=255)                                                                                                                tcactcaAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGc                                                                    >  1:389849/1‑102 (MQ=255)                                                                                                                tcactcaAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGc                                                                    <  2:389849/102‑1 (MQ=255)                                                                                                                tcactcaAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGcc                    >  1:149505/1‑150 (MQ=255)                                                                                                                    tcaAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTCCTGTTGTGCGCCCGTg                >  2:344605/1‑150 (MQ=255)                                                                                                                               tACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCtg     >  2:442462/1‑150 (MQ=255)                                                                                                                                  CAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTgg  >  2:69183‑M1/1‑150 (MQ=255)                                                                                                                                  |                                                                                                                                                      GACGCACAACGCCAGGCACTGGGTGTGCAAGCCCTGCACGTTTTCGAGCGCGGCGGTGCCCGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGG  >  NC_002947/1194444‑1194722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.