New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3514409	4 (0.250)	3 (0.190)	3/246	NT	37.9%	coding (3034/4158 nt)	PP_3108	rhs family protein
	?	NC_002947	= 3514436	6 (0.390)					coding (3061/4158 nt)	PP_3108	rhs family protein

ACAACCCGATCCACCGCCGTTACCAGTACGACCCGGCCGGTGAACTGGTGCGTACCCTCGACAAGCTACGCGGCGAGATCAAGTACGAGTACGAAGCCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3514308‑3514409 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacgAGCCGGTATCGCGACTGCGCAACTGGCCGTTGGCTTCGTACTCGTACTTGATCTCGCCGCGTAGCTTGTCGAGGGTACGCACCAGTTCACCGGCCGGGTCGTACTGGTAACGGCGGTGGATCGGGTTGTAGGCGTGCTCGACCAGCA  <  NC_002947/3514436‑3514290                                                                                                                                                                                                                                                           ACAACCCGATCCACCGCCGTTACCAGTACGACCCGGCCGGTGAACTGGTGCGTACCCTCGACAAGCTACGCGGCGAGATCAAGTACGAGTACGAAGCCAACGAGCCGGTATCGCGACTGCGCAACTGGCCGTTGGCTTCGTACTCGTACT                                                                                                     <  1:396661/150‑1                        CAGTACGACCCGGCCGGTGAACTGGTGAGTACCCTCGACAAGCTACGCGGCGAGATCAAGTACGAGTACGAAGCCAACGAGCCGGTATCGCGACTGCGCAACTGGCCGTTGGCTTC                                                                                                                <  1:379686/116‑1                        CAGTACGACCCGGCCGGTGAACTGGTGAGTACCCTCGACAAGCTACGCGGCGAGATCAAGTACGAGTACGAAGCCAACGAGCCGGTATCGCGACTGCGCAACTGGCCGTTGGCTTC                                                                                                                >  2:379686/1‑116                                                                                                   AACGAGCCGGTATCGCGACTGCGCAACTGGCCGTTGGCTTCGTACTCGTACTTGATCTCGCCGCGTAGCTTGTCGAGGGTACGCACCAGTTCACCGGCCGGGTCGTACTGGTAACGGCGGTGGATCGGGTTGTAGGCGTGGTCGACCAGC   >  2:116550/1‑150                                                                                                    ACGAGCCGGTATCGCGACTGCGCAACTGGCCGTTGGCTTCGTACTCGTACTTGATCTCGCCGCGTAGCTTGTCGAGGGTACGCACCAGTTCACCGGCCGGGTCGTACTGGTAACGGCGGTGGATCGGGTTGTAGGCGTGCTCGACCAGCA  >  2:168901/1‑150                                                                                                                                                                                                                                                           ACAACCCGATCCACCGCCGTTACCAGTACGACCCGGCCGGTGAACTGGTGCGTACCCTCGACAAGCTACGCGGCGAGATCAAGTACGAGTACGAAGCCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3514308‑3514409 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacgAGCCGGTATCGCGACTGCGCAACTGGCCGTTGGCTTCGTACTCGTACTTGATCTCGCCGCGTAGCTTGTCGAGGGTACGCACCAGTTCACCGGCCGGGTCGTACTGGTAACGGCGGTGGATCGGGTTGTAGGCGTGCTCGACCAGCA  <  NC_002947/3514436‑3514290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.