New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3514409 | 4 (0.250) | 3 (0.190) | 3/246 | NT | 37.9% | coding (3034/4158 nt) | PP_3108 | rhs family protein |
? | NC_002947 | = 3514436 | 6 (0.390) | coding (3061/4158 nt) | PP_3108 | rhs family protein |
GTGCACAACACCGGCATCAATACCTCGTTGCTGGTCGAGCACGCCTACAACCCGATCCACCGCCGTTACCAGTACGACCCGGCCGGTGAACTGGTGCGTACCCTCGACAAGCTACGCGGCGAGATCAAGTACGAGTACGAAGCCAACGGCCAGTTGCGCAGTCGCGATACCGGCTCGTTGATCGGCAGTGAGGAGTTCCGCTACGACCCGGCAGCCAACCGCCTGGACTTCAATGCGCGGCAATTCGACAAGGTCAAGGACAACCGGATCAAGCAGTGGCGGGACCAGGAGTACC > NC_002947/3514262‑3514556 | gTGCACAACACCGGCATCAATACCTCGTTGCTGGTCGAGCACGCCTACAACCCGATCCACCGCCGTTACCAGTACGACCCGGCCGGTGAACTGGTGCGTACCCTCGACAAGCTACGCGGCGAGATCAAGTACGAGTACGAAGCCAACGGc < 1:186456/150‑1 (MQ=255) tGCTGGTCGAGCACGCCTACAACCCGATCCACCGCCGTTACCAGTACGACCCGGCCGGTGAACTGGTGCGTACCCTCGACAAGCTACGCGGCGAGATCAAGTACGAGTACGAAGCCAACGGCCAGTTGCGCAGTCGCGATACCGGCTcgt > 2:168901‑M2/1‑147 (MQ=255) gCTGGTCGACCACGCCTACAACCCGATCCACCGCCGTTACCAGTACGACCCGGCCGGTGAACTGGTGCGTACCCTCGACAAGCTACGCGGCGAGATCAAGTACGAGTACGAAGCCAACGGCCAGTTGCGCAGTCGCGATACCGGCTcgtt > 2:116550‑M2/1‑146 (MQ=255) gAGCACGCCTACAACCCGATCCACCGCAGTTACCAGTACGACCCGGCCGGTGAACTGTTTCGTACCCTCAACAAGCTACGCGGCGAGATCAAGTACGAGTACGAAGCCAACGGCCAGTTGCGCAGTCGCGATACCGGCTCGTTGATCGGc > 1:277782/1‑150 (MQ=255) aCAACCCGATCCACCGCCGTTACCAGTACGACCCGGCCGGTGAACTGGTGCGTACCCTCGACAAGCTACGCGGCGAGATCAAGTACGAGTACGAAGCCAACGagccggtatcgcgactgcgcaactggccgttggcttcgtactcgtact < 1:396661‑M1/150‑49 (MQ=255) cgTTACCAGTACGACCCGGCCGGTGAACTGGTGCGTACCCTCGACAAGCTACGCGGCGAGATCAAGTACGAGTACGAAGCCAACGGCCAGTTGCGCAGTCGCGATACCGGCTCGTTGATCGGCAGTGAGGAGTTCCGCTACGACCCGGCa < 2:350736/150‑1 (MQ=255) cAGTACGACCCGGCCGGTGAACTGGTGAGTACCCTCGACAAGCTACGCGGCGAGATCAAGTACGAGTACGAAGCCAACGagccggtatcgcgactgcgcaactggccgttggcttc < 1:379686‑M1/116‑38 (MQ=255) cAGTACGACCCGGCCGGTGAACTGGTGAGTACCCTCGACAAGCTACGCGGCGAGATCAAGTACGAGTACGAAGCCAACGagccggtatcgcgactgcgcaactggccgttggcttc > 2:379686‑M1/1‑79 (MQ=255) ggccggTGAACTGGTGCGTACCCTCGACAAGCTACGCGGCGAGATCAAGTACGAGTACGAAGCCAACGGCCAGTTGCGCAGTCGCGATACCGGCTCGTTGATCGGCAGTGAGGAGTTCCGCTACGACCCGGCAGCCAACCGCCTGGACtt < 2:72248/150‑1 (MQ=255) aTCAAGTACGAGTACGAAGCCAACGGCCAGTTGCGCAGTCGCGATACCGGCTCGTTGATCGGCAGTGAGGAGTTCCGCTACGACCCGGCAGCCAACCGCCTGGACTTCAATGCGCGGCAATTCGACAAGGTCAAGGACAACCGGATCAAg < 1:380323/150‑1 (MQ=255) agtacgagtacgAAGCCAACGGCCAGTTGCGCAGTCGCGATACCGGCTcgttggcttcgtactcgtacttgatctcgccgcgtagcttgtcgagggtacgcaccagttcaccggccgggtcgtactggtaacggcggtggatcgggttgt < 1:396661‑M2/150‑103 (MQ=255) gaAGCCAACGGCCAGTTGCGCAGTCGCGATACCGGCTcgttggcttcgtactcgtacttgatctcgccgcgtagcttgtcgagggtactcaccagttcaccggccgggtcgtactg < 1:379686‑M2/116‑80 (MQ=255) gaAGCCAACGGCCAGTTGCGCAGTCGCGATACCGGCTcgttggcttcgtactcgtacttgatctcgccgcgtagcttgtcgagggtactcaccagttcaccggccgggtcgtactg > 2:379686‑M2/1‑37 (MQ=255) aaCGagccggtatcgcgactgcgcaactggccgttggcttcgtactcgtacttgatctcgccgcgtagcttgtcgagggtacgcaccagttcaccggccgggtcgtactggtaacggcggtggatcgggttgtaggcgtggtcgaccagc > 2:116550‑M1/1‑4 (MQ=255) aaCGGCCAGTTGCGCAGTCGCGATACCGGCTCGTTGATCGGCAGTGAGGAGTTCCGCTACGACCCGGCAGCCAACCGCCTGGACTTCAATGCGCGGCAATTCGACAAGGTCAAGGACAACCGGATCAAGCAGTGGCGGGACCAGGAGTAc > 1:420823/1‑150 (MQ=255) aCGagccggtatcgcgactgcgcaactggccgttggcttcgtactcgtacttgatctcgccgcgtagcttgtcgagggtacgcaccagttcaccggccgggtcgtactggtaacggcggtggatcgggttgtaggcgtgctcgaccagca > 2:168901‑M1/1‑3 (MQ=255) | GTGCACAACACCGGCATCAATACCTCGTTGCTGGTCGAGCACGCCTACAACCCGATCCACCGCCGTTACCAGTACGACCCGGCCGGTGAACTGGTGCGTACCCTCGACAAGCTACGCGGCGAGATCAAGTACGAGTACGAAGCCAACGGCCAGTTGCGCAGTCGCGATACCGGCTCGTTGATCGGCAGTGAGGAGTTCCGCTACGACCCGGCAGCCAACCGCCTGGACTTCAATGCGCGGCAATTCGACAAGGTCAAGGACAACCGGATCAAGCAGTGGCGGGACCAGGAGTACC > NC_002947/3514262‑3514556 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |