New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3833927 = | 12 (0.740) | 4 (0.260) | 4/242 | NT | 25.5% | coding (549/2178 nt) | vgrG‑II | type VI secretion system protein |
? | NC_002947 | 3833958 = | 12 (0.780) | coding (580/2178 nt) | vgrG‑II | type VI secretion system protein |
TAACGCAAGCGCCGCAGGCAAGGCCTGGCCTGATCGCCGCCTCCAACGGATCGGTACAGCACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGATGGCCCCCCGGCTGATCTGGCCCAGCGCCAG‑‑CAGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3834082‑3833927 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccggGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAG > NC_002947/3833958‑3834020 TAACGCAAGCGCCGCAGGCAAGGCCTGGCCTGATCGCCGCCTCCAACGGATCGGTACAGCACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGATGGCCCCCCGGCTGATCTGGCCCAGCGCCAG‑‑C > 1:268273/1‑150 TCGGTACAGCACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGATGGCCCCCCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCATCAAGACCGATGATGA > 1:135710/1‑129 TCGGTACAGCACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGATGGCCCCCCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCATCAAGACCGATGATGA < 2:135710/129‑1 GGCTGATCTGGCCCAGCGCCAG‑‑CAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAG > 1:16649/1‑92 GGCTGATCTGGCCCAGCGCCAG‑‑CAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAG < 2:16649/92‑1 TAACGCAAGCGCCGCAGGCAAGGCCTGGCCTGATCGCCGCCTCCAACGGATCGGTACAGCACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGATGGCCCCCCGGCTGATCTGGCCCAGCGCCAG‑‑CAGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3834082‑3833927 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccggGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAG > NC_002947/3833958‑3834020 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |