New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3833927 = | 12 (0.740) | 4 (0.260) | 4/242 | NT | 25.5% | coding (549/2178 nt) | vgrG‑II | type VI secretion system protein |
? | NC_002947 | 3833958 = | 12 (0.780) | coding (580/2178 nt) | vgrG‑II | type VI secretion system protein |
TCAAGTGTCTCGACCCGCATCAGGTGCGCGAATTTTGCGTGCAGGCCGGTGAAACAGACCTCGACTTCATGGCCCGCCTGGCCGCCGAGGAAGGCATTGTCTACCGCTTCGACCACACGCCGAAACAGCACTTGCTAATCATCACTGACCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAGGTGCTGTACCGATCCGTTGGAGGC > NC_002947/3833779‑3834044 | tCAAGTGTCTCGACCCGCATCAGGTGCGCGAATTTTGCGTGCAGGCCGGTGAAACAGACCTCGACTTCATGGCCCGCCTGGCCGCCGAGGAAGGCATTGTCTACCGCTTCGACCACACGCCGAAACAGCACTTGCTAATCATCACTGAcc < 1:220572/150‑1 (MQ=255) aaGTGTCTCGACCCGCATCAGGTGCGCGAATTTTGCGTGCAGGCCGGTGAAACAGACCTCGACTTCATGGCCCGCCTGGCCGCCGAGGAAGGCATTGTCTACCGCTTCGACCACACGCCGAAACAGCACTTGCTAATCATCACTGACCgg > 1:253739/1‑150 (MQ=255) aaCAGACCTCGACTTCATGGCCCGCCTGGCCGCCGAGGAAGGCATTGTCTACCGCTTCAACCACACGCCGAAACAGCACTTGCTAATCATCACTGACCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCATCAAGACCGAtgatga > 1:190737/1‑150 (MQ=255) ccGCCTGGCCGCCGAGGAAGGCATTGTCTACCGCTTCGACCACACGCCGAAACAGCACTTGCTAATCATCACTGACCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCggg < 2:41454/107‑1 (MQ=255) ccGCCTGGCCGCCGAGGAAGGCATTGTCTACCGCTTCGACCACACGCCGAAACAGCACTTGCTAATCATCACTGACCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCggg > 1:41454/1‑107 (MQ=255) ccGCCTGGCCGCCGAGGAAGGCATTGTCTACCGCTTCGACCACACGCCGAAACAGCACTTGCTAATCATCACTGACCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATga > 2:57259/1‑150 (MQ=255) tGGCCGCCGAGGAAGGCATTGTCTACCGCTTCGACCACACGCCGAAACAGCACTCGCTAATCATCACTGACCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGacgacg > 2:262572/1‑150 (MQ=255) gccgccGAGGAAGGCATTGTCTACCGCTTCGACCACACGCCGAAACAGCACTTGCTAATCATCACTGACCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTg < 2:253739/150‑1 (MQ=255) ctgatcggggcccacgtcgtcattgtgaaacccttcatcctcatcatcggtcttgatggccccCCGGCTG‑‑CTGGCGCTGGGCCAGATCAGcc > 1:16649‑M1/64‑92 (MQ=255) ctgatcggggcccacgtcgtcattgtgaaacccttcatcctcatcatcggtcttgatggccccCCGGCTG‑‑CTGGCGCTGGGCCAGATCAGcc < 2:16649‑M1/29‑1 (MQ=255) aGGCATTGTCTACCGCTTCGACCACACGCCGAAACAGCACTTGCTAATCATCACTGACCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCa < 1:13904/150‑1 (MQ=255) aCCACACGCCGAAACAGCACTTGCTAATCATCACTGACCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAGGTGCTGTACCGATCCGTTg < 2:145392/150‑1 (MQ=255) cacaCGCCGAAACAGCACTTGCTAATCATCACTGACCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAGGTGCTGTACCGATCCGTTGGa < 1:190063/150‑1 (MQ=255) acGCCGAAACAGCACTTGCTAATCATCACTGACCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCATCAAGACCGAtgatga < 1:354812/86‑1 (MQ=255) acGCCGAAACAGCACTTGCTAATCATCACTGACCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCATCAAGACCGAtgatga > 2:354812/1‑86 (MQ=255) acGCCGAAACAGCACTTGCTAATCATCACTGACCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAGGTGCTGTACCGATCCGTTGGAggc > 2:268273/1‑150 (MQ=255) tcatcatcggtcttgatggccccCCGGCTGATCTGGCCCAGCGCCAG‑‑CAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAGGTGCTGTACCGa < 2:135710‑M1/106‑1 (MQ=255) tcatcatcggtcttgatggccccCCGGCTGATCTGGCCCAGCGCCAG‑‑CAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAGGTGCTGTACCGa > 1:135710‑M1/24‑129 (MQ=255) | TCAAGTGTCTCGACCCGCATCAGGTGCGCGAATTTTGCGTGCAGGCCGGTGAAACAGACCTCGACTTCATGGCCCGCCTGGCCGCCGAGGAAGGCATTGTCTACCGCTTCGACCACACGCCGAAACAGCACTTGCTAATCATCACTGACCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAGGTGCTGTACCGATCCGTTGGAGGC > NC_002947/3833779‑3834044 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |