New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4318388 = | 20 (1.240) | 5 (0.320) | 4/246 | NT | 23.7% | coding (605/1221 nt) | PP_3789 | efflux transporter |
? | NC_002947 | 4318412 = | 13 (0.840) | coding (629/1221 nt) | PP_3789 | efflux transporter |
CTTGGTTGGCAGGGTACTGATACAGCAACCACAGGGACAGGAAGAACGTGAAGCGACCGTGAACGACGGTGTTAAAGAATGACCCCAAGGTATAGAGAACCAGATTTCGATCGTTGCCCAAGACTTTCAGGGCGTCCGCCAAT‑GAGGGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4318540‑4318388 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTGGGGTCATTCTTTAACACCGTCGTTCACGGTCGCTTCACGTTCTTCCTGTCCCTGTGGTTGCTGT > NC_002947/4318412‑4318519 CTTGGTTGGCAGGGTACTGATACAGCAACCACAGGGACAGGAAGAACGTGAAGCGACCGTGAACGACGGTGTTAAAGAATGACCCCAAGGTATAGAGAACCAGATTTCGATCGTTGCCCAAGACTTTCAGGGCGTCCGCCAAT‑GAGGGCG > 2:352609/1‑150 ACTGATACAGCAACCACAGGGACAGGAAGAACGTGAAGCGACCGTGAACGACGGTGTTAAAGAATGACCCCAAGGTATAGAGAACCAGATTTCGATCGTTGCCCAAGACTTTCAGGGCG‑CCCTCATTGGCGGACGCCCTGAAAGTCTTGG < 2:243480/150‑1 GGCGTCCGCCAAT‑GAGGGCGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTGGGGTCATTCTTTAACACCGTCGTTCACGGTCGCTTCACGTTCTTCCTGTCCCTGTGGTTGCTGT < 1:183478/131‑1 GGCGTCCGCCAAT‑GAGGGCGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTGGGGTCATTCTTTAACACCGTCGTTCACGGTCGCTTCACGTTCTTCCTGTCCCTGTGGTTGCTGT > 2:183478/1‑131 GGCGTCCGCCAAT‑GAGGGCGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTT > 1:348422/1‑55 GGCGTCCGCCAAT‑GAGGGCGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTT < 2:348422/55‑1 CTTGGTTGGCAGGGTACTGATACAGCAACCACAGGGACAGGAAGAACGTGAAGCGACCGTGAACGACGGTGTTAAAGAATGACCCCAAGGTATAGAGAACCAGATTTCGATCGTTGCCCAAGACTTTCAGGGCGTCCGCCAAT‑GAGGGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4318540‑4318388 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTGGGGTCATTCTTTAACACCGTCGTTCACGGTCGCTTCACGTTCTTCCTGTCCCTGTGGTTGCTGT > NC_002947/4318412‑4318519 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |