| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4318388 = | 20 (1.240) | 5 (0.320) | 4/246 | NT | 23.7% | coding (605/1221 nt) | PP_3789 | efflux transporter |
| ? | NC_002947 | 4318412 = | 13 (0.840) | coding (629/1221 nt) | PP_3789 | efflux transporter | |||||
GCTCGGGGTCCGGTTGGCGGAAGTCTCACTTACCCTGGCGCTTTTGGTGGCAGCGGGTGCCTGCGGGGCAGCGATGGTGGTGATGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTGGGGTCATTCTTTAACACCGTCGTTCACGGTCGCTTCACGTTCTTCCTGTCCCTGTGGTTGCTGTATCAGTACCCTG > NC_002947/4318254‑4318531 | gCTCGGGGTCCGGTTGGCGGAAGTCTCACTTACCCTGGCGCTTTTGGTGGCAGCGGGTGCCTGCGGGGCAGCGATGGTGGTGATGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGc > 2:79359/1‑150 (MQ=255) ggggGCCGGTTGGCGGAAGTCTCACTTACCCTGGCGCTTTTGGTGGCAGCGGGTGCCTGCGGGGCAGCGATGGTGGTGATGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGAc > 2:422457/1‑150 (MQ=255) gTTGGCGGAAGTCTCACTTACCCTGGCGCTTTTGGTGGCAGCGGGTGCCTGCGGGGCAGCGATGGTGGTGATGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGaa > 2:389510/1‑150 (MQ=255) ggAAGTCTCACTTACCCTGGCGCTTTTGGTGGCAGCGGGTGCCTGCGGGGCAGCGATGGTGGTGATGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGAAAGTCtt > 1:266573/1‑150 (MQ=255) acagcaaccacagggacaggaagaacgtgaagcgaccgtgaacgacggtgttaaagaatgaccccaaggtatagagaaccagatttcgatcgttgcccaagactttcaGGGCGCCCTC‑ATTGGCGGACGcc < 1:183478‑M1/23‑1 (MQ=255) acagcaaccacagggacaggaagaacgtgaagcgaccgtgaacgacggtgttaaagaatgaccccaaggtatagagaaccagatttcgatcgttgcccaagactttcaGGGCGCCCTC‑ATTGGCGGACGcc > 2:183478‑M1/109‑131 (MQ=255) aCCCTGGCGCTTTTGGTGGCAGCGGGTGCCTGCGGGGCAGCGATGGTGGTGATGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGAAAGTCTTGGGCAACGATCGa > 2:96661/1‑150 (MQ=255) tGGCGCTTTTGGTGGCAGCGGGTGCCTGCGGGGCAGCGATNGTGGTGNTGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGAAAGTCTTGGGCAACGATCGAAATc > 1:352609/1‑150 (MQ=255) ttttGGTGGCAGCGGGTGCCTGCGGGGCAGCGATGGTGGTGATGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGaaa < 1:137814/122‑1 (MQ=255) ttttGGTGGCAGCGGGTGCCTGCGGGGCAGCGATGGTGGTGATGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGaaa > 2:138003/1‑122 (MQ=255) ttttGGTGGCAGCGGGTGCCTGCGGGGCAGCGATGGTGGTGATGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGaaa > 2:137814/1‑122 (MQ=255) ttttGGTGGCAGCGGGTGCCTGCGGGGCAGCGATGGTGGTGATGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGaaa < 1:138003/122‑1 (MQ=255) ttttGGTGGCAGCGGGTGCCTGCGGGGCAGCGATGGTGGTGATGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTtc > 2:36454/1‑150 (MQ=255) ttGGTGGCAGCGGGTGCCTGCGGGGCAGCGATGGTGGTGATGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTtctc < 2:266573/150‑1 (MQ=255) gggTGCCTGCGGGGCAGCGATGGTGGTGATGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTggg < 1:36454/150‑1 (MQ=255) ggTGCCTGCGGGGCAGCGATGGTGGTGATGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTgggg > 1:439566/1‑150 (MQ=255) tGCCTGCGGGGCAGCGATGGTGGTGATGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTGGGGTc < 1:96661/150‑1 (MQ=255) gCAGCGATGGTGGTGATGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAggg > 2:115272/1‑69 (MQ=255) gCAGCGATGGTGGTGATGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAggg < 1:115272/69‑1 (MQ=255) gatgatGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTGGGGTCATTCTTTAGCACCGCCGTTCACgg > 2:309169/1‑150 (MQ=255) cgcAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTggg > 1:49739/1‑108 (MQ=255) cgcAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTggg < 2:49739/108‑1 (MQ=255) aaccagatttcgatcgttgcccaagactttcaGGGCGCCCTC‑ATTGGCGGACGcc < 2:348422‑M1/23‑1 (MQ=255) aaccagatttcgatcgttgcccaagactttcaGGGCGCCCTC‑ATTGGCGGACGcc > 1:348422‑M1/33‑55 (MQ=255) cAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTGGGGTCATTCTTTAACACCGTCGTTCACGGTCGCTTCACGTTCTTCCTGTcc < 1:389510/150‑1 (MQ=255) ccaagactttcaGGGCGTCCGCCAATGAGGG‑CGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTGGGGTCATTCTTTAACACCGTCGTTCACGGTCGCTTCACGTTCTTCCTGTCCCTGTGGTTGCTGTATCAGt < 2:243480‑M1/138‑1 (MQ=255) aGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTGGGGTCATTCTTTAACACCGTCGTTCACGGTCGCTTCACGTTCTTCCTGTCCCTGTGGTTGCTGTATCAGTACCCTg < 1:309169/150‑1 (MQ=255) | GCTCGGGGTCCGGTTGGCGGAAGTCTCACTTACCCTGGCGCTTTTGGTGGCAGCGGGTGCCTGCGGGGCAGCGATGGTGGTGATGATGTGCCTGGGCGCAAGTCAGGGCCAACCTCGCACCTCGCTGAAGACAGGGGCGCCCTC‑ATTGGCGGACGCCCTGAAAGTCTTGGGCAACGATCGAAATCTGGTTCTCTATACCTTGGGGTCATTCTTTAACACCGTCGTTCACGGTCGCTTCACGTTCTTCCTGTCCCTGTGGTTGCTGTATCAGTACCCTG > NC_002947/4318254‑4318531 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |