| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5557811 = | 23 (1.420) | 3 (0.230) | 3/210 | NT | 15.8% | intergenic (‑131/+200) | PP_4888/purA | methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase |
| ? | NC_002947 | 5557893 = | 13 (0.980) | intergenic (‑213/+118) | PP_4888/purA | methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase | |||||
CCCTGAGAAGGGCCGCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTACCCGCGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5557980‑5557811‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taggagcgggtttacccgcgaatACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAA > NC_002947/5557893‑5558004 CCCTGAGAAGGGCCGCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCCGGCCGTTGTtg > 1:280924/1‑148 CCTGAGAAGGGCCGCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGG > 1:336556/1‑150 AAGGGCCGCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGG > 2:151732/1‑150 GCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGAGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTACCC < 1:32382/150‑1 CGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGGGGAGGACGTTGTAGGAGAGGGTTTACCCG > 1:205358/1‑150 TGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGG > 1:167013/1‑126 TGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGG < 2:167013/126‑1 GCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGG > 1:252065/1‑123 GCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGG < 2:252065/123‑1 CGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCC > 1:92218/1‑150 GTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAA < 2:92218/150‑1 ACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCT > 1:270736/1‑150 AGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAA > 1:319381/1‑134 AGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAA < 2:319381/134‑1 CCCTGAGAAGGGCCGCGGCGTTTTCATTTGTGGGCATGTCTGTGCTGGCCAATATCCACCGGTAATCCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTATGTGGGCACACAACGATGGTTGGGCGCAGGCCGTTGTAGGAGCGGGTTTACCCGCGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5557980‑5557811‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taggagcgggtttacccgcgaatACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAAAACGCCGCGGCCCTTCTCAGGGCCGCGGCGTCAGATCAGCCTGGAA > NC_002947/5557893‑5558004 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |