New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5557811 = | 23 (1.420) | 3 (0.230) | 3/210 | NT | 15.8% | intergenic (‑131/+200) | PP_4888/purA | methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase |
? | NC_002947 | 5557893 = | 13 (0.980) | intergenic (‑213/+118) | PP_4888/purA | methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase |
GGATGGCAGACACGGTGTAACCCTCGTGTTTTCTGGCGCCACTATTTTGATGGCATCTACAGAAACTTCTTACAGCAAGGGTTGTGCCGCAGGCAGCGGGGAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAA > NC_002947/5557668‑5557958 | ggATGGCAGACACGGTGTAACCCTCGTGTTTTCTGGCGCCACTATTTTGATGGCATCTACAGAAACTTCTTACAGCAAGGGTTGTGCCGCAGGCAGCGGGGAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTcgcg < 1:157066/150‑1 (MQ=255) tAACCCTCGTGTTTTCTGGCGCCACTATTTTGATGGCATCTACAGAAACTTCTTACAGCAAGGGTTGTGCCGCAGGCAGCGGGGAAATGCGCAAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAAc > 1:220049/1‑140 (MQ=255) tAACCCTCGTGTTTTCTGGCGCCACTATTTTGATGGCATCTACAGAAACTTCTTACAGCAAGGGTTGTGCCGCAGGCAGCGGGGAAATGCGCAAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAAc < 2:220049/140‑1 (MQ=255) cccTCGTGTTTTCTGGCGCCACTATTTTGATGGCATCTACAGAAACTTCTTACAGCAAGGGTTGTGCCGCAGGCAGCGGGGAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAAc > 1:130511/1‑150 (MQ=255) ccTCGTGTTTTCTGGCGCCACTATTTTGATGGCATCTACAGAAACTTCTTACAGCAAGGGTTGTGCCGCAGGCAGCGGGGAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACg < 2:75625/150‑1 (MQ=255) ttccaggctgatctgacgccgcggccctgagaagggccgcggcgttttcatttgtgggcatgtctgtgctggccaatatccaccggtaatccaccgttgccgccgctaccgtATTCGCGGGTAAACCCGCTCCt > 1:319381‑M1/113‑134 (MQ=255) ttccaggctgatctgacgccgcggccctgagaagggccgcggcgttttcatttgtgggcatgtctgtgctggccaatatccaccggtaatccaccgttgccgccgctaccgtATTCGCGGGTAAACCCGCTCCt < 2:319381‑M1/22‑1 (MQ=255) tACAGAAACTTCTTACAGCAAGGGTTGTGCCGCAGGCAGCGGGGAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGa > 1:151732/1‑150 (MQ=255) aGAAACTTCTTACAGCAAGGGTTGTGCCGCAGGCAGCGGGGAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCg > 1:13341/1‑150 (MQ=255) aGAAACTTCTTACAGCAAGGGTTGTGCCGCAGGCAGCGGGGAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCg > 2:354388/1‑150 (MQ=255) aaaCTTCTTACAGCAAGGGTTGTGCCGCAGGCAGCGGGGAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCggg < 2:423450/150‑1 (MQ=255) agggccgcggcgttttcatttgtgggcatgtctgtgctggccaatatccaccggtaatccaccgttgccgccgctaccgtATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGt > 1:270736‑M1/81‑150 (MQ=255) tcttACAGCAAGGGTTGTGCCGCAGGCAGCGGGGAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTAc < 1:372399/150‑1 (MQ=255) cttACAGCAAGGGTTGTGCCGCAGGCAGCGGGGAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTAcc > 1:5627/1‑150 (MQ=255) aaGGGTTGTGCCGCAGGCAGCGGGGAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATa > 1:208440/1‑150 (MQ=255) ttcatttgtgggcatgtctgtgctggccaatatccaccggtaatccaccgttgccgccgctaccgtATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATAc < 2:92218‑M1/84‑1 (MQ=255) ccGCAGGCAGCGGGGAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAgcggc < 2:5627/150‑1 (MQ=255) ggcatgtctgtgctggccaatatccaccggtaatccaccgttgccgccgctaccgtATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAgcggcg > 1:92218‑M1/57‑150 (MQ=255) agCGGGGAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCaa > 2:371481/1‑89 (MQ=255) agCGGGGAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCaa < 1:371481/89‑1 (MQ=255) gggAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGa < 2:208440/150‑1 (MQ=255) gggAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGACTGCGCCCAACCATCGTTGTTTGCCCACATAGGAGGGGGTTGACCCAGTAATACAGTAGCGTCAGCAAGGGTGGa > 2:205358/1‑150 (MQ=255) aaaTGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTa > 2:90829/1‑150 (MQ=255) gcgcCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCgg < 1:354388/150‑1 (MQ=255) tAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCCACGCTGGATTACCGCTGGCTATTCGc > 2:336556/1‑150 (MQ=39) tAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGc > 1:184367/1‑150 (MQ=255) aTGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGcc > 2:581/1‑149 (MQ=255) gTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGAc < 1:90829/150‑1 (MQ=255) ccATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCACACAAATGaa < 2:130511/150‑1 (MQ=255) | GGATGGCAGACACGGTGTAACCCTCGTGTTTTCTGGCGCCACTATTTTGATGGCATCTACAGAAACTTCTTACAGCAAGGGTTGTGCCGCAGGCAGCGGGGAAATGCGCCAAGGTCTAGCAATGGGGTTTCGTGTGCAGGCCCATTCGCGGGTAAACCCGCTCCTACAACGGCCTGCGCCCAACCATCGTTGTGTGCCCACATAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGGATTACCGGTGGATATTGGCCAGCACAGACATGCCCACAAATGAA > NC_002947/5557668‑5557958 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |