New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1042217 =	26 (1.610)	4 (0.260)	4/242	NT	15.5%	coding (24/1311 nt)	colS	integral membrane sensor signal transduction histidine kinase
	?	NC_002947	1042258 =	19 (1.240)					coding (65/1311 nt)	colS	integral membrane sensor signal transduction histidine kinase

CTGATAGCGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCCTGCTGCGTATGGA  >  NC_002947/1042074‑1042363                                                                                                                                                |                                                                                                                                                   gtctggacgaggccgatgactccagtcactgacgctgtccatacgcagcaggcgctgcaggtcaccgcccagtaccgaggaaataagtcactcttagactaagggcactgtgccgacgataccgaatgcgaaggccccggccaCCAgcgc                                                                                                                                              <  1:363829‑M1/7‑1 (MQ=255)              ccTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCt                                                                                                                                 <  1:51229/150‑1 (MQ=255)                  gactccagtcactgacgctgtccatacgcagcaggcgctgcaggtcaccgcccagtaccgaggaaatcagtcgctcttcgaccaggtgcaccgtgccgacgataccgaatgcgaaggccccggccaCCAGCGCATCATCATCGCCTTTGc                                                                                                                             <  1:131983‑M1/24‑1 (MQ=255)                       ccATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGAGCATCATCATCGCCTTTGCCCtga                                                                                                                        >  1:341425/1‑150 (MQ=255)                              gaTCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAgcgc                                                                                                                 >  2:396608/2‑150 (MQ=255)                              cATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACTGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAgcgc                                                                                                                 >  1:424072/1‑150 (MQ=255)                                     tGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCtggtg                                                                                                          <  1:200878/150‑1 (MQ=255)                                     tGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCtggtg                                                                                                          >  2:119992/1‑150 (MQ=255)                                      tccatacgcagcaggcgctgcaggtcaccgcccagtaccgaggaaatcagtcgctcttcgaccaggtgcaccgtgccgacgataccgaatgcgaaggccccggccaCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCtggtgg                                                                                                         >  2:131983‑M1/107‑150 (MQ=255)                                          tacgcagcaggcgctgcaggtcaccgcccagtaccgaggaaatcagtcgctcttcgaccaggtgcaccgtgccgacgataccgaatgcgaaggccccggccaCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCt                                                                                                              >  2:420412‑M1/103‑141 (MQ=255)                                          tacgcagcaggcgctgcaggtcaccgcccagtaccgaggaaatcagtcgctcttcgaccaggtgcaccgtgccgacgataccgaatgcgaaggccccggccaCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCt                                                                                                              <  1:420412‑M1/39‑1 (MQ=255)                                            ggTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCgggg                                                                                                   >  2:67960/1‑150 (MQ=255)                                                        aCCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCg                                                                                       >  1:95853/1‑150 (MQ=255)                                                                  aaaCCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCgg                                                                             >  1:40578/1‑150 (MQ=255)                                                                       gTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCtgga                                                                                                           >  1:83262/1‑114 (MQ=255)                                                                       gTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCtgga                                                                                                           <  2:83262/115‑2 (MQ=255)                                                                             gcATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCAcc                                                                  >  1:285611/1‑150 (MQ=255)                                                                                        aTGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAagag                                                       >  2:171638/1‑150 (MQ=255)                                                                                           gCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGa                                                    <  1:119992/150‑1 (MQ=255)                                                                                             gTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACt                                                  <  2:40578/150‑1 (MQ=255)                                                                                                ggCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGcatca                                                                                                                                          >  1:347818/1‑59 (MQ=255)                                                                                                ggCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGcatca                                                                                                                                          <  2:347818/59‑1 (MQ=255)                                                                                                 gCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTAtcgtcg                                                                              <  2:195752/118‑1 (MQ=255)                                                                                                 gCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTAtcgtcg                                                                              >  1:195752/1‑118 (MQ=255)                                                                                                             ccGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTg                                  <  2:341425/150‑1 (MQ=255)                                                                                                               gAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTggg                                <  2:424072/150‑1 (MQ=255)                                                                                                                    ccGCGATGGCGTTTCAGCACAGCACAGACCAGTCCATCACCATTTCCGTTTCCCTAATGATCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCGCGGTGCACCTGAGCGAAGAGCGACTGATTTCCTCGGTACTGAGCGGTg                           >  2:228644/1‑150 (MQ=255)                                                                                                                         aTGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTg                      >  2:265422/1‑150 (MQ=255)                                                                                                                               tttAAGCAACGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAgcgc                >  2:16758/1‑150 (MQ=255)                                                                                                                                         gCCTTGCCTAGCGCATCGTCATCGCCTTTGCCCTGATGAGCGCGCTTGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCCTGCTGCGTa      <  1:138722/150‑1 (MQ=255)                                                                                                                                          ccTTGCCCAGCGCATCATCATCGCCTTTGCCCTGGTGGGCGCGCTGGTGGCCGAGCGAGGGGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCCTGCTGCGTAt     <  1:228644/150‑1 (MQ=255)                                                                                                                                             tGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACTTGCAGCGCCTGCTGCGTATGGa  <  1:171638/150‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                   CTGATAGCGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCCTGCTGCGTATGGA  >  NC_002947/1042074‑1042363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.