New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3356367 | 11 (0.680) | 4 (0.250) | 4/250 | NT | 26.0% | coding (524/891 nt) | PP_2952 | LysR family transcriptional regulator |
? | NC_002947 | = 3356386 | 12 (0.760) | coding (505/891 nt) | PP_2952 | LysR family transcriptional regulator |
ATATCGGCGTCGTCGCAGAGCAGGGCGCCACGCACTTGGACGGTCTGCGTTCCCAGTTGCCACTTGTCGTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTGGCAGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAAAGATCGGCGATCTGGTCGG > NC_002947/3356223‑3356508 | atatCGGCGTCGTCGCAGAGCAGGGCGCCACGCACTTGGACGGTCTGCGTTCCCAGTTGCCACTTGTCGTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCGCGcc < 1:383323/150‑1 (MQ=255) gTTCCCAGTTGCCACTTGTCGTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGt < 2:412903/150‑1 (MQ=255) gTTCCCAGTTGCCACTTGTCGTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGt < 2:412801/150‑1 (MQ=255) ttCCCAGTTGCCACTTGTCGTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTg < 1:266384/150‑1 (MQ=255) ccAGTTGCCACTTGTCGTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGATTGTACGGTGCCTTACCTCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTGGCa < 1:277233/150‑1 (MQ=255) cAGTTGCCACTTGTCGTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTGGCAg > 1:219597/1‑150 (MQ=255) gTCGTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTCGCCGGTGTTTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACACATTTTTTCCAAGGTGCCAGTGGCAGGGCTATATAGtt < 1:35836/150‑1 (MQ=255) gTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCtcgcccgagtacctggcgcggcaagg > 1:363207‑M1/1‑77 (MQ=255) gTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCtcgcccgagtacctggcgcggcaagg < 2:363207‑M1/103‑27 (MQ=255) gTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTGGCAGGGCTATATAGTTGGc > 2:219539/1‑150 (MQ=255) ggtccccTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCGCGCCAGGTACTCGGGCGGGGCGACCGGCACCTTGCGGTTCCAAGGTTCCAGTTGCGGGGCTAGATAGTTGGCGTCggg > 1:398451/4‑149 (MQ=255) gcATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCtcgcccgagtacctggcgcggcaag < 2:23937‑M1/85‑26 (MQ=255) gcATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCtcgcccgagtacctggcgcggcaag > 1:23937‑M1/1‑60 (MQ=255) ttGGACGGTGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTGGCAGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAAAGATCGGCGAt > 1:113511/1‑150 (MQ=255) ggTGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTGGCAGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAAAGATCGGCGATCTGGTc < 2:113511/150‑1 (MQ=255) tGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACGTTGCGGTTCCAAGGTGCGAGTGGCAGGGCTATATAGTTTGCGTCGGGGTTCAGGCCATAGCGGTTGGCGATATCTACCGGATCGCGAAAAAGATGGGCGATCTGGTCgg > 2:159532/1‑150 (MQ=37) ccTTGCCGCGCCAGGTACTCGGGCGAggcaaggcaccgtccaagcgcctggagatctgctcgaacaccagtgcctgctgtacatgcagcaggggcgggtctac > 1:363207‑M2/1‑26 (MQ=255) ccTTGCCGCGCCAGGTACTCGGGCGAggcaaggcaccgtccaagcgcctggagatctgctcgaacaccagtgcctgctgtacatgcagcaggggcgggtctac < 2:363207‑M2/103‑78 (MQ=255) cTTGCCGCGCCAGGTACTCGGGCGAggcaaggcaccgtccaagcgcctggagatctgctcgaacaccagtgcctgctgtacatgc > 1:23937‑M2/1‑25 (MQ=255) cTTGCCGCGCCAGGTACTCGGGCGAggcaaggcaccgtccaagcgcctggagatctgctcgaacaccagtgcctgctgtacatgc < 2:23937‑M2/85‑61 (MQ=255) | ATATCGGCGTCGTCGCAGAGCAGGGCGCCACGCACTTGGACGGTCTGCGTTCCCAGTTGCCACTTGTCGTAGACCCGCCCCTGCTGCATGTACAGCAGGCACTGGTGTTCGAGCAGATCTCCAGGCGCTTGGACGGTGCCTTGCCGCGCCAGGTACTCGGGCGAGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTGGCAGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAAAGATCGGCGATCTGGTCGG > NC_002947/3356223‑3356508 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |