New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5201627 =	8 (0.490)	4 (0.350)	4/182	NT	42.8%	intergenic (‑65/‑115)	PP_4582/PP_4583	membrane protein/putative Peptidase
	?	NC_002947	5201722 =	5 (0.430)					intergenic (‑160/‑20)	PP_4582/PP_4583	membrane protein/putative Peptidase

GGTGAGCTTGAAGCCCACCAGCAGGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCA  >  NC_002947/5201479‑5201773                                                                                                                                                     |                                                                                                                                                   gcttcctggtaggcgttttcagcttgcaggtaagcgagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttggggaatcgggggttggggcttggttggcattgaaggtctcttgattggagtt                                                                                                                                                   <  2:193168‑M1/2‑1 (MQ=255)                caccaGCAGGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTATTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCctc                                                                                                                                    >  1:102626/1‑150 (MQ=255)                       cttgcaggtaagcgagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCgg                                                                                                                             >  1:340369‑M1/127‑150 (MQ=255)                            aggtaagcgagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTaaa                                                                                                                        <  2:340947‑M1/29‑1 (MQ=255)                                 agcgagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCtgt                                                                                                                                             >  1:140071‑M1/117‑124 (MQ=255)                                 agcgagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCtgt                                                                                                                                             <  2:140071‑M1/8‑1 (MQ=255)                                  gcgagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGAGTGTGACGGCCTCTTGGCGTGTATAGCCGCt                                                                                                                  <  2:249003‑M1/35‑1 (MQ=255)                                                      cccAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGCGACCCCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCt                                                                                              <  2:197901/150‑1 (MQ=255)                                                                               ggTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCt                                                                                                                                               <  1:106096/76‑1 (MQ=255)                                                                               ggTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCt                                                                                                                                               >  2:106096/1‑76 (MQ=255)                                                                                   aTGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGaa                                                                       <  1:288684/144‑1 (MQ=255)                                                                                   aTGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGaa                                                                       >  2:288684/1‑144 (MQ=255)                                                                                                          gggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGt                                                                                  >  1:392230‑M1/44‑110 (MQ=255)                                                                                                          gggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGt                                                                                  <  2:392230‑M1/67‑1 (MQ=255)                                                                                                                         tAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTg                                                                                          <  2:179892/87‑1 (MQ=255)                                                                                                                         tAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTg                                                                                          >  1:179892/1‑87 (MQ=255)                                                                                                                               attgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCgg                                                                                    >  1:253205‑M1/23‑87 (MQ=255)                                                                                                                               attgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCgg                                                                                    <  2:253205‑M1/65‑1 (MQ=255)                                                                                                                                                  tgtTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCa  >  2:5462/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GGTGAGCTTGAAGCCCACCAGCAGGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCA  >  NC_002947/5201479‑5201773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.