New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5201627 =	8 (0.490)	4 (0.350)	4/182	NT	42.8%	intergenic (‑65/‑115)	PP_4582/PP_4583	membrane protein/putative Peptidase
	?	NC_002947	5201722 =	5 (0.430)					intergenic (‑160/‑20)	PP_4582/PP_4583	membrane protein/putative Peptidase

TGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGC  >  NC_002947/5201624‑5201869                                                                                                   |                                                                                                                                                    tgtTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCa                                                                                                  >  2:5462/1‑150 (MQ=255)       CCTGTGCCGGCCTCTTCGCGGGTAAAACACCGCCTACCTCGGTGCGATCCCTGGTGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTCCCCAAGCCGa                                                                                            <  1:193168‑M1/150‑1 (MQ=255)             CCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGGCCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGc                                                                                      <  1:249003‑M1/150‑1 (MQ=255)              CGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGc                                                                                                                     >  1:161937‑M1/1‑118 (MQ=255)              CGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGc                                                                                                                     <  2:161937‑M1/118‑1 (MQ=255)              CGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGcc                                                                                     <  2:182698‑M1/150‑1 (MQ=255)                   TCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCaa                                                                                                 >  1:366579‑M1/1‑133 (MQ=255)                   TCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCaa                                                                                                 <  2:366579‑M1/133‑1 (MQ=255)                            GTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGc                                                                       >  1:5462‑M1/1‑150 (MQ=255)                                acccgctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAAccccc                                                                                                           <  2:392230‑M2/43‑1 (MQ=255)                                acccgctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAAccccc                                                                                                           >  1:392230‑M2/68‑110 (MQ=255)                                  ccgctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAAt                                                                                                                                >  1:253205‑M2/66‑87 (MQ=255)                                  ccgctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAAt                                                                                                                                <  2:253205‑M2/22‑1 (MQ=255)                                  CCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCt                                                                 <  2:381492‑M1/150‑1 (MQ=255)                                      TCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCaa                                                             >  1:182698‑M1/1‑150 (MQ=255)                                              cGGTGCGATCCCTGTTGGAGCGTGTTTACCCGCGAAGAGGCCGGCCCAGGCAACTCCAATCAAGAGACCTTCAATACCAACCAAGCCCCAACCCCCGATTGCCCAAACCGACCAGGCGACCGACCCGTATGCCTGGCTGCAACAGCGCGa                                                     >  2:196513/1‑150 (MQ=255)                                               ggTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGac                                                    >  2:390694/1‑150 (MQ=255)                                                    gATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACAcccc                                               >  1:345287/1‑150 (MQ=255)                                                        ccTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATTAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGGCACCCCCGAg                                           <  1:381492/150‑1 (MQ=255)                                                         cTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAgg                                          >  1:340947/1‑150 (MQ=255)                                                          tGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGt                                         >  1:316016/1‑150 (MQ=255)                                                            ttGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGa                                                                                                         <  2:327856/84‑1 (MQ=255)                                                            ttGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGa                                                                                                         >  1:327856/1‑84 (MQ=255)                                                                agcggctatacacgccaagaggccgtcacactcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGc                                   <  2:249003‑M2/115‑1 (MQ=255)                                                                      tttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCt                             <  2:340947‑M2/121‑1 (MQ=255)                                                                           ccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAg                        >  1:340369‑M2/25‑150 (MQ=255)                                                                                           acaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCt                                  <  2:140071‑M2/116‑1 (MQ=255)                                                                                           acaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCt                                  >  1:140071‑M2/9‑124 (MQ=255)                                                                                                 aaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTCCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGc  <  2:193168‑M2/148‑1 (MQ=255)                                                                                                   |                                                                                                                                                    TGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGC  >  NC_002947/5201624‑5201869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.