New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5773524 =	29 (1.790)	4 (0.260)	4/248	NT	12.1%	coding (31/657 nt)	betI	choline‑responsive transcriptional repressor BetI
	?	NC_002947	5773557 =	30 (1.910)					coding (64/657 nt)	betI	choline‑responsive transcriptional repressor BetI

TTCTTTATTGATTGAACGTTCAATCAAAACAAAATAGACTGGCCTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCA  >  NC_002947/5773398‑5773667                                                                                                                               |                                                                                                                                                ttCTTTATTGATTGAACGTTCAATCAAAACAAAATAGACTGGCCTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGa                                                                                                                                     >  2:423610/1‑139 (MQ=255) ttCTTTATTGATTGAACGTTCAATCAAAACAAAATAGACTGGCCTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGa                                                                                                                                     <  1:423610/139‑1 (MQ=255)    tttATTGATTGAACGTTCAATCAAAACAAAATAGACTGGCCTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTg                                                                                                                       <  1:147434/150‑1 (MQ=255)          gattgaACGTTCAATCAAAACAAAATAGACTGGCCTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCg                                                                                                                 <  1:163535/150‑1 (MQ=255)                    tcaatcaaAACAAAATAGACTGGCCTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAgg                                                                                                       >  2:267765/1‑150 (MQ=255)                     taatcaaAACAAAATAGACTGGCCTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGt                                                                                                      <  1:19173/149‑1 (MQ=255)                       atcaaAACAAAATAGACTGGCCTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAATGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCg                                                                                                    <  2:38542/150‑1 (MQ=255)                              caaaaTAGACTGGCCTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTggg                                                                                             <  2:151841/150‑1 (MQ=255)                                      cgaaagtagtgactgatgatgccgttcgacacaccggccaaacgggcaatcagagcaatgctggcgtcccccagtccgacctgatcgacCGCCAGCAGTTGATCGAAGCCACATTGCAGGCgg                                                                                                                >  2:3117‑M1/90‑123 (MQ=255)                                      cgaaagtagtgactgatgatgccgttcgacacaccggccaaacgggcaatcagagcaatgctggcgtcccccagtccgacctgatcgacCGCCAGCAGTTGATCGAAGCCACATTGCAGGCgg                                                                                                                <  1:3117‑M1/34‑1 (MQ=255)                                        tGGCCTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGc                                                                                   >  1:66422/1‑150 (MQ=255)                                            cTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTg                                                                               >  2:153722/1‑150 (MQ=255)                                                 ccGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTg                                                                          >  2:265997/1‑150 (MQ=255)                                                            gccTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATCGCCCGttt                                                               <  1:265997/150‑1 (MQ=255)                                                                     caccggccaaacgggcaatcagcgcaatgctggcgtcccccagtccgacctgatcgacCGCCAGCAGTTGATCGAAGCCACATTGCAgg                                                                                                                   <  1:377613‑M1/31‑1 (MQ=255)                                                                     caccggccaaacgggcaatcagcgcaatgctggcgtcccccagtccgacctgatcgacCGCCAGCAGTTGATCGAAGCCACATTGCAgg                                                                                                                   >  2:377613‑M1/59‑89 (MQ=255)                                                                         tCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCg                                                  >  2:410112/1‑150 (MQ=255)                                                                         tCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCg                                                  >  2:316098/1‑150 (MQ=255)                                                                         tCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATACGGCGCCAGCAGTTGATCGAAGCCACAGAGCAGGCGGTCGATCAGGTCGGACTGGGCGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCg                                                  >  1:29530/1‑150 (MQ=255)                                                                                      gagaTAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCAtcatca                                     >  1:137256/1‑150 (MQ=255)                                                                                           aGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCac                                <  1:267765/150‑1 (MQ=255)                                                                                                     ccAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCggg                      >  2:351687/1‑150 (MQ=255)                                                                                                         ggTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTc                                                   >  2:147858/1‑117 (MQ=255)                                                                                                         ggTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTc                                                   <  1:147858/117‑1 (MQ=255)                                                                                                                aTGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGcatcat                                       >  1:167235/1‑122 (MQ=255)                                                                                                                aTGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGcatcat                                       <  2:167235/122‑1 (MQ=255)                                                                                                                aTGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGc           <  2:66422/150‑1 (MQ=255)                                                                                                                aTGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGc           <  1:351687/150‑1 (MQ=255)                                                                                                                     aCCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGt                                   <  1:18683/121‑1 (MQ=255)                                                                                                                     aCCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGt                                   >  2:18683/1‑121 (MQ=255)                                                                                                                         aTCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGAGTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCg                        >  2:262492/1‑128 (MQ=255)                                                                                                                         aTCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCg                        <  1:262492/128‑1 (MQ=255)                                                                                                                         aTCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCa  >  1:295269/1‑150 (MQ=255)                                                                                                                               |                                                                                                                                                TTCTTTATTGATTGAACGTTCAATCAAAACAAAATAGACTGGCCTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCA  >  NC_002947/5773398‑5773667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.