New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5773524 =	29 (1.790)	4 (0.260)	4/248	NT	12.1%	coding (31/657 nt)	betI	choline‑responsive transcriptional repressor BetI
	?	NC_002947	5773557 =	30 (1.910)					coding (64/657 nt)	betI	choline‑responsive transcriptional repressor BetI

TCAATCAAAACAAAATAGACTGGCCTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATG  >  NC_002947/5773417‑5773694                                                                                                                                             |                                                                                                                                          tcaatcaaAACAAAATAGACTGGCCTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAgg                                                                                                                                  >  2:267765/1‑150 (MQ=255)  taatcaaAACAAAATAGACTGGCCTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGt                                                                                                                                 <  1:19173/149‑1 (MQ=255)    atcaaAACAAAATAGACTGGCCTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAATGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCg                                                                                                                               <  2:38542/150‑1 (MQ=255)           caaaaTAGACTGGCCTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTggg                                                                                                                        <  2:151841/150‑1 (MQ=255)                   cgaaagtagtgactgatgatgccgttcgacacaccggccaaacgggcaatcagagcaatgctggcgtcccccagtccgacctgatcgacCGCCAGCAGTTGATCGAAGCCACATTGCAGGCgg                                                                                                                                           <  1:3117‑M1/34‑1 (MQ=255)                   cgaaagtagtgactgatgatgccgttcgacacaccggccaaacgggcaatcagagcaatgctggcgtcccccagtccgacctgatcgacCGCCAGCAGTTGATCGAAGCCACATTGCAGGCgg                                                                                                                                           >  2:3117‑M1/90‑123 (MQ=255)                     tGGCCTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGc                                                                                                              >  1:66422/1‑150 (MQ=255)                         cTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTg                                                                                                          >  2:153722/1‑150 (MQ=255)                              ccGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTg                                                                                                     >  2:265997/1‑150 (MQ=255)                                         gccTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATCGCCCGttt                                                                                          <  1:265997/150‑1 (MQ=255)                                                      tCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCg                                                                             >  2:316098/1‑150 (MQ=255)                                                      tCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCg                                                                             >  2:410112/1‑150 (MQ=255)                                                      tCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATACGGCGCCAGCAGTTGATCGAAGCCACAGAGCAGGCGGTCGATCAGGTCGGACTGGGCGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCg                                                                             >  1:29530/1‑150 (MQ=255)                                                                   gagaTAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCAtcatca                                                                >  1:137256/1‑150 (MQ=255)                                                                        aGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCac                                                           <  1:267765/150‑1 (MQ=255)                                                                                  ccAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCggg                                                 >  2:351687/1‑150 (MQ=255)                                                                                      ggTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTc                                                                              >  2:147858/1‑117 (MQ=255)                                                                                      ggTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTc                                                                              <  1:147858/117‑1 (MQ=255)                                                                                             aTGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGcatcat                                                                  >  1:167235/1‑122 (MQ=255)                                                                                             aTGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGcatcat                                                                  <  2:167235/122‑1 (MQ=255)                                                                                             aTGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGc                                      <  1:351687/150‑1 (MQ=255)                                                                                             aTGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGc                                      <  2:66422/150‑1 (MQ=255)                                                                                                  aCCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGt                                                              >  2:18683/1‑121 (MQ=255)                                                                                                  aCCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGt                                                              <  1:18683/121‑1 (MQ=255)                                                                                                      aTCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGAGTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCg                                                   >  2:262492/1‑128 (MQ=255)                                                                                                      aTCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCg                                                   <  1:262492/128‑1 (MQ=255)                                                                                                      aTCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCa                             >  1:295269/1‑150 (MQ=255)                                                                                                           ccgcctgcaatgtggcttcgatcaactgctggcgGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCTCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCg                                                   <  1:3117‑M2/89‑1 (MQ=255)                                                                                                           ccgcctgcaatgtggcttcgatcaactgctggcgGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCTCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCg                                                   >  2:3117‑M2/35‑123 (MQ=255)                                                                                                              cctgcaatgtggcttcgatcaactgctggcgGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGgtg                                                                                  >  2:377613‑M2/32‑89 (MQ=255)                                                                                                              cctgcaatgtggcttcgatcaactgctggcgGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGgtg                                                                                  <  1:377613‑M2/58‑1 (MQ=255)                                                                                                                agcagTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATgg                   <  1:153722/150‑1 (MQ=255)                                                                                                                        aTCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTAcatc           <  1:325550/150‑1 (MQ=255)                                                                                                                         tCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTAcatca          <  2:295269/150‑1 (MQ=255)                                                                                                                              gCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGCTACATCATGAGc     >  2:293016/1‑150 (MQ=255)                                                                                                                                 acaTTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATg  >  1:114437/1‑150 (MQ=255)                                                                                                                                             gTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATgg                   >  2:189978/1‑121 (MQ=255)                                                                                                                                             gTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATgg                   <  1:189978/121‑1 (MQ=255)                                                                                                                                             |                                                                                                                                          TCAATCAAAACAAAATAGACTGGCCTTCGCCGAGTCAGCCGCCTGTCGTCTGCTCGCAGGCCTGAGGAGATAGCAAGATGCCCAAGGTCGGTATGCAACCCATCCGGCGCCAGCAGTTGATCGAAGCCACATTGCAGGCGGTCGATCAGGTCGGACTGGGGGACGCCAGCATTGCGCTGATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATG  >  NC_002947/5773417‑5773694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.