New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1758576 =	8 (0.490)	3 (0.200)	3/238	NT	24.6%	coding (1590/1686 nt)	PP_1563	terminase large subunit
	?	NC_002947	1758613 =	11 (0.730)					coding (1627/1686 nt)	PP_1563	terminase large subunit

CCGGTACTGACCTGGATGGCCTCGAATGTCGTGGCGAAGCTGGACGTGAAGGACAACATCTACCCCAACAAGGAGCGCCCGGAGAACAAGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGTTGGCTAACGGGAAAACCTATGAAAACTGGCCTGATCATCTTTCTGGTGCTTGCCGCCGGCGGTTTGCTGCTGGGCGTTGCTGG  >  NC_002947/1758472‑1758748                                                                                                                                               |                                                                                                                                        ccGGTACTGAGCTGAATGGCCTCGAATGTCGTGGCGAAGCTGGACGTGAAGGACAACATCTACCCCAACAAGGAGCGCCGGGAGGACAAGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCAT‑GCCCATCACGCTCGCTATcgaa                                                                                                                                 >  2:172021/1‑149 (MQ=255) ccGGTACTGACCTGGATGGCCTCGAATGTCGTGGCGAAGCTGGACGTGAAGGACAACATCTACCCCAACAAGGAGCGCCCGGAGAACAAGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATcgac                                                                                                                                 <  1:198208/150‑1 (MQ=255) aagcaccagaaagatgatcaggccagttttcataggttttcccgttagccaaccacgatcgggctggcaagaaagtcatcgaagtggccggagtcgtcgataccGAGCTTGATCACCGGCTGTGCCGT‑GGCCATCAAGCTCg                                                                                                                                         <  1:113025‑M1/38‑1 (MQ=255) aagcaccagaaagatgatcaggccagttttcataggttttcccgttagccaaccacgatcgggctggcaagaaagtcatcgaagtggccggagtcgtcgataccGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCg                                                                                                                                         >  2:113025‑M1/105‑142 (MQ=255)         agaaagatgatcaggccagttttcataggttttcccgttagccaaccacgatcgggctggcaagaaagtcatcgaagtggccggagtcgtcgataccgagcttgatcaccggctgcgccgtggccatcaagctcGGTATCGACGACTCCg                                                                                                                          <  1:236404‑M2/16‑1 (MQ=255)                                              gTGAAGGACAACATCTACCCCAACAAGGAGCGCCCGGAGAACAAGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGtt                                                                                    >  1:157945/1‑150 (MQ=255)                                                     acaacaTCTACCCCAACAAGGAGCGCCCGGAGAACAAGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGTTGGCTAAc                                                                             >  2:60505/1‑150 (MQ=255)                                                      caacaTCTACCCCAACAAGGAGCGCCCGGAGAACAAGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGTTGGCTAACg                                                                            <  1:60505/150‑1 (MQ=255)                                                             tACCCCAACAAGGAGCGCCCGGAGAACAAGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTg                                                                                       >  1:437402/1‑132 (MQ=255)                                                             tACCCCAACAAGGAGCGCCCGGAGAACAAGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTg                                                                                       <  2:437402/132‑1 (MQ=255)                                                                                         cggagtcgtcgataccGAGCTTGATGGCCA‑CGGCGCAGCCGGTGATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGTTGGCTAACGGGAAAACCTATGAAAACTGGCCTGATCATCTTTCt                                         <  1:236404‑M1/134‑1 (MQ=255)                                                                                         aGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGTTGGCTAACGGGAAAACCTATGAAAACTGGCCTGATCATCTTTCt                                         >  2:389736/1‑150 (MQ=255)                                                                                                         cgagcttgatggccacggcgcagccggtgatcaagctcGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGTTGGCTAACGGGAAAACCTATGAAAACTGGCCTGATCATCTTTCTGGTGCtt                                  >  2:113025‑M2/39‑142 (MQ=255)                                                                                                         cgagcttgatggccacggcacagccggtgatcaagctcGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGTTGGCTAACGGGAAAACCTATGAAAACTGGCCTGATCATCTTTCTGGTGCtt                                  <  1:113025‑M2/104‑1 (MQ=255)                                                                                                              TGATCACAGGCTGCGCCGT‑GGCCATCAAGCTCGGTATCCACGACTCCGGCCACTTCGATGACTTTCTAGCCAGCCCGATCGTGGTTGGCTAACGGGAAAACCTATGAAAACTCGCCTGATCATCTTTCTGGTGCTTGCCGCCGGCGGttt                    >  1:172021‑M1/1‑150 (MQ=255)                                                                                                               GATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTTGTTGCCTAACGGGAAAACCTATGAAAACTGCCATGATCATCTTTCTGGTGCTTGCCGCCGGCGGTTTg                   <  2:327981‑M1/150‑1 (MQ=255)                                                                                                                   acgggCTGCGCCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGTTGGCTAACGGGAAAACCTATGAAAACTGGCCTGATCATCTTTCTGGTGCTTGCCGCCGGCGGTTtgctgc               >  1:445203/4‑150 (MQ=255)                                                                                                                            gcCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGTTGGCTAACGGGAAAACCTATGAAAACTGGCCTGATCATCTTTCTGGTGCTTGCCGCCGGCGGTTTGCTGCTGGGCGTTg      >  2:243267/1‑150 (MQ=255)                                                                                                                              cGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGTTGGCTAACGGGAAAACCTATGAAAACTGGCCTGATCATCTTTCTGGTGCTTGCCGCCGGCGGTTTGCTGCTGGGCGTTGCt    <  1:243267/150‑1 (MQ=255)                                                                                                                                t‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGTTGGCTAACGGGAAAACCTATGAAAACTGGCCTGATCATCTTTCTGGTGCTTGCCGCCGGCGGTTTGCTGCTGGGCGTTGCTgg  <  2:157945/150‑1 (MQ=255)                                                                                                                                               |                                                                                                                                        CCGGTACTGACCTGGATGGCCTCGAATGTCGTGGCGAAGCTGGACGTGAAGGACAACATCTACCCCAACAAGGAGCGCCCGGAGAACAAGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGTTGGCTAACGGGAAAACCTATGAAAACTGGCCTGATCATCTTTCTGGTGCTTGCCGCCGGCGGTTTGCTGCTGGGCGTTGCTGG  >  NC_002947/1758472‑1758748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.