New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1965064 =	12 (0.740)	3 (0.190)	3/246	NT	19.7%	coding (1233/2526 nt)	yegE	phosphodiesterase domain‑containing diguanylate cyclase
	?	NC_002947	1965122 =	13 (0.840)					coding (1291/2526 nt)	yegE	phosphodiesterase domain‑containing diguanylate cyclase

ACCCAGGAACGCCAGTACATCGCCAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGCGGCACATCTGCGCGGTGCTGCAATCCGGCCTGCGTGAGGGCGATACGCTGGCGCGGCTGGGCGGCGATG  >  NC_002947/1964981‑1965266                                                                                                                                              |                                                                                                                                                 aCCCAGGAACGCCAGTACATCGCCAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTc                                                                                                                                          <  1:139292/150‑1 (MQ=255)   ccAGGAACGCCAGTACATCGCCAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGAt                                                                                                                                              >  2:344933/1‑144 (MQ=255)   ccAGGAACGCCAGTACATCGCCAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGAt                                                                                                                                              <  1:344933/144‑1 (MQ=255)   ccAGGAACGCCAGTACATCGCCAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTcct                                                                                                                                        >  1:214972/1‑150 (MQ=255)       gAACGCCAGTACATCGCCAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTcctcgac                                                                                                                                    <  1:116835/150‑1 (MQ=255)       cgcagcaactcatcgccggcagcgtggccacaggtgtcgttgaccagcttgaactggtcgaggtcgaggaacatcagCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTcctcgac                                                                                                                                    >  1:44243‑M1/78‑150 (MQ=255)            ccAGTACATCGCCAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACTGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCTCTGATGTTcctcgacctcga                                                                                                                               <  2:163641/150‑1 (MQ=255)                        cAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCt                                                                                                                   >  1:347541/1‑150 (MQ=255)                                 cTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGa                                                                                                          >  2:421178/1‑150 (MQ=255)                                                               gCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGtt                                                                            <  2:267969/150‑1 (MQ=255)                                                                     gtcgaggaacatcagcgaatgccgcccggcctggcgcgccaggtcgttgagcgcctgctccaggcggtattcgCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGCg                                                                      >  1:44243‑M2/74‑150 (MQ=255)                                                                                  ttCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGTCGGGCGGCATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGa                                                                                  >  1:407815/1‑125 (MQ=255)                                                                                  ttCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGTCGGGCGGCATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGa                                                                                  <  2:407815/125‑1 (MQ=255)                                                                                      aatgccgcccggcctggcgcgccaggtcgttgagcgcctgctccaggcggtattcgCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTtgctgc                                                                       >  2:11155‑M2/57‑132 (MQ=255)                                                                                      aatgccgcccggcctggcgcgccaggtcgttgagcgcctgctccaggcggtattcgCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTtgctgc                                                                       <  1:11155‑M2/76‑1 (MQ=255)                                                                                                             aaCGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCAc                                                                                             >  2:114955/1‑87 (MQ=255)                                                                                                             aaCGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCAc                                                                                             <  1:114955/87‑1 (MQ=255)                                                                                                                   cTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTtgctgc                                                                       >  1:290338/1‑103 (MQ=255)                                                                                                                   cTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTtgctgc                                                                       <  2:290338/103‑1 (MQ=255)                                                                                                                                         attcgCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGCGGCACATCTGCGCGGTGCTGCAATCCGGCCTGCGTGAGGGCGATACGCTGGCGCGGCTGGGCGGCGATg  >  1:422485‑M2/6‑150 (MQ=255)                                                                                                                                              |                                                                                                                                                 ACCCAGGAACGCCAGTACATCGCCAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGCGGCACATCTGCGCGGTGCTGCAATCCGGCCTGCGTGAGGGCGATACGCTGGCGCGGCTGGGCGGCGATG  >  NC_002947/1964981‑1965266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.