New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6032808 =	16 (0.990)	7 (0.580)	7/190	NT	52.1%	intergenic (+16/+120)	dppA‑IV/PP_5284	dipeptide transport protein/hypothetical protein
	?	NC_002947	6032890 =	1 (0.080)					intergenic (+98/+38)	dppA‑IV/PP_5284	dipeptide transport protein/hypothetical protein

GCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGCCCCCGCTTC  >  NC_002947/6032759‑6033030                                                                                                                                     |                                                                                                                                             gcTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGGTTACCCGCGAAAGGGCCCGTACTGACCCta                                                                                                                            >  1:444564/1‑150 (MQ=255)             ggagtactgagagccttatagggtcagtaccggcctcTTCGCGGGTAAACCCGCTCCTACATGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAg                                                                                                                >  1:147097‑M1/38‑150 (MQ=255)                ggtgacggtgacCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAg                                                                                                                                             <  1:1821/118‑1 (MQ=255)                ggtgacggtgacCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAg                                                                                                                                             >  2:1821/1‑118 (MQ=255)                    ctgagagccttatagggtcagtacgggccctttcgcgggtaaacccgctcctacaggggtagcgtcaactgccaggctggcgctacccatgtaggagcgggtttacccgcgaaGAGGCCGGTACTGACCCTATAAGGCTCTCAGTACTcc                                                                                                          >  1:147097‑M2/114‑150 (MQ=255)                                                                      ctacaggggtagcgtcaactgccaggctggcgctacccatgtaggagcgggtttacccgcgaaGAGGCCGGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCa                                                        <  2:147097‑M2/87‑1 (MQ=255)                                                                      TACAGGGGTAGCGTCAAC‑TGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCAc                                                       <  1:399500‑M1/150‑1 (MQ=255)                                                                      TACAGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTc                                                                                                           >  2:130958‑M1/1‑98 (MQ=255)                                                                      TACAGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTc                                                                                                           <  1:130958‑M1/98‑1 (MQ=255)                                                                      TACAGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCAc                                                       <  2:194986‑M1/150‑1 (MQ=255)                                                                        acaggggtagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCAcc                                                      <  2:399500‑M2/89‑1 (MQ=255)                                                                         AGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCaa                                                    >  1:194986‑M1/1‑150 (MQ=255)                                                                               tagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATaa                                                                                                                         >  1:26297‑M2/55‑76 (MQ=255)                                                                               tagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATaa                                                                                                                         <  2:26297‑M2/22‑1 (MQ=255)                                                                               tagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGt                                                                                                               <  1:310266‑M2/32‑1 (MQ=255)                                                                               tagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGt                                                                                                               >  2:310266‑M2/55‑86 (MQ=255)                                                                                                          ccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACatcaatc                    >  2:75537‑M2/28‑150 (MQ=255)                                                                                                           cctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCt                                                                                                        <  1:196992‑M2/39‑1 (MQ=255)                                                                                                           cctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCt                                                                                                        >  2:196992‑M2/27‑65 (MQ=255)                                                                                                                              ccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGCCCCCGCTTc  >  1:290652‑M2/8‑148 (MQ=255)                                                                                                                              ccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGCCCCCGCTTc  <  2:290652‑M2/141‑1 (MQ=255)                                                                                                                                     |                                                                                                                                             GCTGGATTTCAGCAAGGTGACGGTGACCAAGTAAGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGCCCCCGCTTC  >  NC_002947/6032759‑6033030

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.