New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6174834 =	29 (1.790)	4 (0.260)	4/248	NT	13.1%	coding (399/420 nt)	atpC	ATP synthase subunit epsilon
	?	NC_002947	6174870 =	25 (1.590)					coding (363/420 nt)	atpC	ATP synthase subunit epsilon

TGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTCCTGAGCCTGAGCTTCATCCAGGTCTGCAGCACGTTGCACGGTATCGGCAAGCACCTTGACCATGTTCGGCTGAAC  >  NC_002947/6174722‑6175019                                                                                                                                                     |                                                                                                                                                      tGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGAc                                                                                                                                                      >  2:394039/1‑150 (MQ=255) tGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGATACTCTTTTACTCAATCGCAACAGAAGTTATCAGCAGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCATCGGCCAGAc                                                                                                                                                      >  1:214453/1‑150 (MQ=255)  gAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGACAATACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACg                                                                                                                                                     >  1:189351/1‑150 (MQ=255)           ggggAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTgcggcggc                                                                                                                                            >  2:316082/1‑150 (MQ=255)                                         ccGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAACCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAg                                                                                                              >  1:423814/1‑150 (MQ=255)                                          cGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGa                                                                                                             >  2:380422/1‑150 (MQ=255)                                          cGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGa                                                                                                             <  1:380422/150‑1 (MQ=255)                                                tACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAgg                                                                                                       <  2:189351/150‑1 (MQ=255)                                                tACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAgg                                                                                                       <  1:98803/150‑1 (MQ=255)                                                          cTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGTCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCgg                                                                                             <  2:337172/150‑1 (MQ=255)                                                           tCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAg                                                                                                              >  2:35036/1‑132 (MQ=255)                                                           tCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAg                                                                                                              <  1:35036/132‑1 (MQ=255)                                                           tCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGc                                                                                            >  2:372424/1‑150 (MQ=255)                                                           tCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCCCGGc                                                                                            >  1:285491/1‑150 (MQ=255)                                                             aaTCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAg                                                                                          >  1:55807/1‑150 (MQ=255)                                                             aaTCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAg                                                                                          >  2:386195/1‑150 (MQ=255)                                                              aTCGCAACAGAAGTCATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGc                                                                                         >  1:320704/1‑150 (MQ=255)                                                                 gCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCtt                                                                                      >  1:174234/1‑150 (MQ=255)                                                                      tctgaaaggcgcggacttcgactacggcgccgccgccgcacgtCTGGCAGGGACGCAGCTGGGCTGCGGCCTCGGCCAGACGTgcggc                                                                                                                                               <  1:234930‑M1/45‑1 (MQ=255)                                                                      tctgaaaggcgcggacttcgactacggcgccgccgccgcacgtCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTgcggc                                                                                                                                               >  2:234930‑M1/44‑88 (MQ=255)                                                                       gAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGc                                                                                <  1:161172/150‑1 (MQ=255)                                                                                aGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTcctgagc                                                                       <  2:174234/150‑1 (MQ=255)                                                                                    ggggCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTcctgagcctga                                                                   <  2:423814/150‑1 (MQ=255)                                                                                    ggggCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTcctgagcctga                                                                   <  1:386195/150‑1 (MQ=255)                                                                                     gggCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTcctgagcctgag                                                                  <  1:408987/150‑1 (MQ=255)                                                                                      ggCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTCctgagcctgagc                                                                 <  2:417959/150‑1 (MQ=255)                                                                                         cGATTACTTGCCTTTCCCCCTTTACTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTCCTGAGCCTGAGCTTc                                                              <  2:214453/150‑1 (MQ=255)                                                                                               cTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTCCTGAGCCTGAGCTTCATCCAg                                                        <  1:316082/150‑1 (MQ=255)                                                                                                ttGGCTTTGCGCATTTGCTGCACGGTAGGCAGCTGGGCTGCGGCCTCGGCCAGCCGTGCTGCGGCGGCCCCGCAGTCGAAGTCCGCGCCTTTCAGAATCACGGCGTTATCGGCAGCCTGTAGGGCCGCCTGAGCCTGAGCTTCATTCAgg                                                       >  2:137409/1‑150 (MQ=255)                                                                                                        gccgcacgtctggccgaggccgcagcccagctgcgtccctgccagACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGa                                                                                                             <  1:234930‑M2/43‑1 (MQ=255)                                                                                                        gccgcacgtctggccgaggccgcagcccagctgcgtaccgtccagACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGa                                                                                                             >  2:234930‑M2/46‑88 (MQ=255)                                                                                                                  TGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCgg                                                                                             >  2:113892‑M1/1‑94 (MQ=255)                                                                                                                  TGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCgg                                                                                             <  1:113892‑M1/94‑1 (MQ=255)                                                                                                                  TGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTCCTGAGCCTGAGCTTCATCCAGGTCTGCAGCACGTTGCACg                                     <  1:17206‑M1/150‑1 (MQ=255)                                                                                                                         ggccgcagcccagctgcgtaccgtccagACGTGCGGCGGCGGCGCCg                                                                                                                                     <  2:301510‑M2/19‑1 (MQ=255)                                                                                                                         ggccgcagcccagctgcgtaccgtccagACGTGCGGCGGCGGCGCCg                                                                                                                                     >  1:301510‑M2/29‑47 (MQ=255)                                                                                                                                           ccTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTCCTGAGCCTGAGCTTCATCCAGGTCTGCAGCACGTTGCACGGTATCGGCAAGCACCTTGACCATGt            >  1:368642/1‑150 (MQ=255)                                                                                                                                                     aCGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTCCTGAGCCTGAGCTTCATCCAGGTCTGCAGCACGTTGCACGGTATCGGCAAGCACCTTGACCATGTTCGGCTGAAc  <  2:320704/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      TGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTCCTGAGCCTGAGCTTCATCCAGGTCTGCAGCACGTTGCACGGTATCGGCAAGCACCTTGACCATGTTCGGCTGAAC  >  NC_002947/6174722‑6175019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.