New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 2047296 =11 (0.570)4 (0.220) 4/248 NT 27.1% coding (768/1197 nt) PP_1820 benzoate transport protein
?NC_002947 2047345 = 11 (0.590)coding (719/1197 nt) PP_1820 benzoate transport protein

CGCACCACACCGCCGCGGTGTAGCGTTTGGCCGGGTCTTCATGGGCATGCGGCCCGGTGCAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTG  >  NC_002947/2047148‑2047440
                                                                                                                                                    |                                                                                                                                                
cGCACCACACCGCCGCGGTGTAGCGTTTGGCCGGGTCTTCATGGGCATGCGGCCCGGTGCAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAgcg                                                                                                                                                 <  2:438680/150‑1 (MQ=255)
cGCACCACACCGCCGCGGTGTAGCGTTTGGCCGGGTCTTCATGGGCATGCGGCCCGGTGCAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGAAGCGAGGCAAAGCCGGTGGCCGAAATCAgcg                                                                                                                                                 <  1:173506/150‑1 (MQ=255)
                      gCGTTTGGCCGGGTCTTCATGGGCATGCGGCCCGGTGCAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGGAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGcc                                                                                                                           <  1:429226/150‑1 (MQ=255)
                         tttGGCCGGGTCTTCATGGGCATGCGGCCCGGTGCAGATCGCCGCGCTCATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTc                                                                                                                        <  2:330673/150‑1 (MQ=255)
                                     ttCATGGGCATGCGGCCCGGTGCAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATGAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGAc                                                                                                            >  2:336036/1‑150 (MQ=255)
                                                                  ccgcGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCa                                                                               >  1:195076/1‑150 (MQ=255)
                                                                                tcgctggcggcaaccatcagcatcggcattccgctgttcgtggtggccatgacctcgcagaacatgccCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGt                                                                                           <  1:286668‑M1/56‑1 (MQ=255)
                                                                                tcgctggcggcaaccatcagcatcggcattccgctgttcgtggtggccatgacctcgcagaacatgccCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGt                                                                                           >  2:286668‑M1/69‑124 (MQ=255)
                                                                                gccAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGa                                                                                    >  2:394363/1‑131 (MQ=255)
                                                                                gccAGGTTCACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGa                                                                                    <  1:394363/131‑1 (MQ=255)
                                                                                           cccATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGcc                                                      >  1:377254/1‑150 (MQ=255)
                                                                                             cATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGa                                                    >  2:432264/1‑150 (MQ=255)
                                                                                                                              cAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTgggg                   >  2:460987/1‑150 (MQ=255)
                                                                                                                              cAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTgggg                   <  2:286204/150‑1 (MQ=255)
                                                                                                                                   ccGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTc              <  1:432264/150‑1 (MQ=255)
                                                                                                                                      tcgcagaacatgccCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGc                                                                                                         >  2:431437‑M1/15‑56 (MQ=255)
                                                                                                                                      tcgcagaacatgccCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGc                                                                                                         <  1:431437‑M1/42‑1 (MQ=255)
                                                                                                                                               aTCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTg  <  2:195076/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                
CGCACCACACCGCCGCGGTGTAGCGTTTGGCCGGGTCTTCATGGGCATGCGGCCCGGTGCAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTG  >  NC_002947/2047148‑2047440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.