New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2047296 = | 11 (0.570) | 4 (0.220) | 4/248 | NT | 27.1% | coding (768/1197 nt) | PP_1820 | benzoate transport protein |
? | NC_002947 | 2047345 = | 11 (0.590) | coding (719/1197 nt) | PP_1820 | benzoate transport protein |
CCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTGGCCACTTCCAGGTGGAAGCCGCTAAAGTCCAGCAGGCCCAACGCGCCGGACAAT > NC_002947/2047214‑2047494 | ccgcGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCa > 1:195076/1‑150 (MQ=255) tcgctggcggcaaccatcagcatcggcattccgctgttcgtggtggccatgacctcgcagaacatgccCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGt < 1:286668‑M1/56‑1 (MQ=255) tcgctggcggcaaccatcagcatcggcattccgctgttcgtggtggccatgacctcgcagaacatgccCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGt > 2:286668‑M1/69‑124 (MQ=255) gccAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGa > 2:394363/1‑131 (MQ=255) gccAGGTTCACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGa < 1:394363/131‑1 (MQ=255) cccATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGcc > 1:377254/1‑150 (MQ=255) cATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGa > 2:432264/1‑150 (MQ=255) cAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTgggg > 2:460987/1‑150 (MQ=255) cAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTgggg < 2:286204/150‑1 (MQ=255) ccGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTc < 1:432264/150‑1 (MQ=255) acatgcccggcgtggccgtcctgcgtgccgacggctaccaggtaccggcctcgccgGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCga > 2:286668‑M2/57‑124 (MQ=255) acatgcccggcgtggccgtcctgcgtgccgacggctaccaggtaccggcctcgccgGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCga < 1:286668‑M2/68‑1 (MQ=255) aTCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTg < 2:195076/150‑1 (MQ=255) gccgtcctgcgtgccgacggctaccaggtaccggcctcgccgGGCATGTTCTGCGa < 1:431437‑M2/14‑1 (MQ=255) gccgtcctgcgtgccgacggctaccaggtaccggcctcgccgGGCATGTTCTGCGa > 2:431437‑M2/43‑56 (MQ=255) ggTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCAGCCAGCGAGAAGATTGGGGTGGTCCACACCGGCTTGGCGACATCCAGATAGAAGccaa > 1:69335/1‑148 (MQ=255) ggACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTGGCCACTTCCAGGTGGAAGCCGCTAAAGTCCAGCAGGCCCa > 1:42422/1‑150 (MQ=255) ggCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGTATGCCGATTCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTGCCCACTTCCAGGTGGAAGCCGCTAAAGTCCAGCAGGCCCAACGCGCCGGACAAt < 2:32684/150‑1 (MQ=255) | CCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTGGCCACTTCCAGGTGGAAGCCGCTAAAGTCCAGCAGGCCCAACGCGCCGGACAAT > NC_002947/2047214‑2047494 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |