| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2301539 = | 17 (0.880) | 3 (0.170) | 3/230 | NT | 15.7% | intergenic (‑140/‑191) | sbcD/PP_5497 | exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein |
| ? | NC_002947 | 2301624 = | 17 (0.990) | intergenic (‑225/‑106) | sbcD/PP_5497 | exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein | |||||
CAAGCCAGCTCTCATAGAACTGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGG‑AAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTAC > NC_002947/2301488‑2301768 | cAAGCCAGCTCTCATAGAACTGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGc < 2:90038/150‑1 (MQ=255) ccAGCTCTCATAGAACTGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTgg > 2:113546/1‑150 (MQ=255) gAACTGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAg > 1:9886/1‑150 (MQ=255) aaCTGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGt < 1:31688/150‑1 (MQ=255) aCTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAACCCACGCGGGGCATGGCACCGGCTGCGCCCGTGTTCGCGGGCGCGCCCGAACCCCTACGTACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGAt < 1:335408/150‑1 (MQ=25) tttAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTgcgg < 1:113546/150‑1 (MQ=255) cTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCt > 2:401060/1‑102 (MQ=255) cTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCt < 1:401060/102‑1 (MQ=255) GGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGG‑AAAAATTGTGTTCGa > 2:47551‑M1/1‑150 (MQ=255) GGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGG‑AAAAATTGTGTTCGAGCaaa > 1:57575‑M1/1‑150 (MQ=255) ggcgcgcccgcgaacaccggcgcagccggtgccatgcaccgcgttggattcttcgcgggcacgcccgctcccacaTGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGG‑AAAAATTGTGTTCGAg < 1:46288‑M2/70‑1 (MQ=255) ggcgcgcccgcgaacaccggcgcagccggtgccatgcaccgcgttggattcttcgcgggcacgcccgctcccacaTGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGG‑AAAAATTGTGTTCGAg > 2:46288‑M2/76‑145 (MQ=255) CGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGG‑AAAAATTGTGTTCGAGCAAACTa > 2:355453‑M1/1‑150 (MQ=255) gcgcccgcgaacaccggcgcagccggtgccatgcaccgcgttggattcttcgcgggcacgcccgctcccacaTGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGG‑AAAAATTGTGTTCGAGCAAACTAc > 2:471947‑M2/73‑150 (MQ=255) tCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGCCCCGTGCGCTCCCACATGGTCCACGCTTGCCTGGCATTTTTTTGAGTTGTCTCGCCTTTGATTGCTGCGG‑AAAATTTGTGTTCGAGCAAACTACAACTAGCttgcttt > 2:69976/1‑144 (MQ=37) gTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGG‑AAAAATTGTGTTCGAGCAACGGACAACTGGCGCACTTGTATGAGGCt > 2:115203/1‑150 (MQ=255) aCCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATg < 2:9886/150‑1 (MQ=255) cGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGG‑AAAAATTGTGTTc > 2:323342/1‑105 (MQ=255) cGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGG‑AAAAATTGTGTTc < 1:323342/105‑1 (MQ=255) gcCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGG‑AAAAATTGTGTTCGAGCAAACTACAACTGGCGCACTTGTATGAGGCTAGGCGATGGCGACCTTgg < 2:29469/150‑1 (MQ=255) tgtTCGCGCCCGCCCCCTCTCGCACGTGGCACACGCTTGCCTGGCATTTTTGTGACGTGTCTCGCCGTGCATTCCGGCGG‑AAAAATTGTGTTCGCGCAACCTACATCTGGCTCACTTGTATTAGGCTAGGCGATGGCGACCTTGGcacat < 2:13086/150‑2 (MQ=255) ttCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGG‑AAAAATtgt > 2:25981/1‑87 (MQ=255) ttCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGG‑AAAAATtgt < 1:25981/87‑1 (MQ=255) gcacgcccgctcccacaTGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGG‑AAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACa < 1:471947‑M2/133‑1 (MQ=255) ccacaTGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGG‑AAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAgg < 2:306062‑M2/104‑1 (MQ=255) ccacaTGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGG‑AAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAgg > 1:306062‑M2/6‑109 (MQ=255) ccacaTGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGG‑AAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTAc < 1:313403‑M2/145‑1 (MQ=255) | CAAGCCAGCTCTCATAGAACTGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGG‑AAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTAC > NC_002947/2301488‑2301768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |