New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4588043	24 (1.240)	4 (0.230)	4/230	NT	14.4%	intergenic (‑183/‑139)	PP_4063/ivd	long‑chain fatty acid‑‑CoA ligase/isovaleryl‑CoA dehydrogenase
	?	NC_002947	= 4588104	26 (1.510)					intergenic (‑244/‑78)	PP_4063/ivd	long‑chain fatty acid‑‑CoA ligase/isovaleryl‑CoA dehydrogenase

CCTCATGCAGGTTTACGTTAACGTAAAGGTGATGAACGACACCCACTTGAGGCGCCACGCCGCCCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCCTCCCTGAACTTCGCCCTGGGCGAGACCATCGACATGCTCCGCGACCAG  >  NC_002947/4587964‑4588241                                                                                                                                             |                                                                                                                                          ccTCATGCAGGTTTACGTTAACGTAAAGGTGATGAACGACACCCACTTGAGGCGCCACGCCGCCCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATgcccgctcc                                                                                                                                  >  1:111690‑M2/1‑141 (MQ=255)   tCATGCAGGTTTACGTTAACGTAAAGGTGATGAACGACACCCACTTGAGGCGCCACGCCGCCCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCAAgcccgctccca                                                                                                                                >  2:196356‑M2/1‑139 (MQ=255)            ttttCGTTCTCGAAAAGGGGATGAACGACACCCACTTGAGGCGCCACGCCGCCCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGggggcg                                                                                                                       <  2:258935/150‑1 (MQ=255)                    aaCGTAAAGGTGATGAACGACACCCACTTGAGGCGCCACGCCGCCCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGa                                                                                                               <  1:404575/150‑1 (MQ=255)                     ccggaaaGGTGATGAACGACACCCACTTGAGGCGCCACGCCGCCCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGAt                                                                                                              <  2:150251/146‑1 (MQ=255)                           aGGTGATGAACGACACCCAGTTGAGGCGCCACGCCGCCCGCTGTGGGAGCGGGCTTTCCCGCGAATGCGACCAATCAGGTAATGACGGCCACCGCCACGACGACGTCGTAGCCATCCAGCCGGCCACGGGGGGCGGGGCCGGATCCCAAg                                                                                                        >  2:352998/1‑150 (MQ=255)                              tgatgaACGACACCCACTTGAGGCGCCACGCCGCCCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTa                                                                                                     >  2:84045/1‑150 (MQ=255)                               gatgaACGACACCCACTTGAGGCGCCACGCCGCCCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTAt                                                                                                    <  1:352998/150‑1 (MQ=255)                                atgaACGACACCCACTTGAGGCGCCACGCCGCCCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATg                                                                                                   <  1:84045/150‑1 (MQ=255)                                     cGACACCCACTTGAGGCGCCACGCCGCCCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATg                                                                                                   <  2:171607/145‑1 (MQ=255)                                     cGACACCCACTTGAGGCGCCACGCCGCCCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATg                                                                                                   >  1:171607/1‑145 (MQ=255)                                       acacCCACTTGAGGCGCCACGCCGCCCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGCTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATGGTGTAAc                                                                                            <  1:261399/150‑1 (MQ=255)                                             aCTTGAGGCGCCACGCCGCCCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGGTCCCAAGCTATGGTGTAACCCAAtt                                                                                      >  1:483538/1‑150 (MQ=255)                                             aCTTGAGGCGCCACGCCGCCCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATGGTGTAACCCAAtt                                                                                      >  1:79755/1‑150 (MQ=255)                                              cTTGAGGCGCCACGCCGCCCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATGGTGTAACCCAAttt                                                                                     >  1:2603/1‑150 (MQ=255)                                              cTTGAGGCGCCACGCCGCCCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATGGTGTAACCCAAttt                                                                                     >  1:180513/1‑150 (MQ=255)                                                 taGGCGCCAGGCCGCCCTCTGTGTGAGCGGGCTTTCCCGCGAATTCGACCCATCAGGTAATTTCGGTTACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATGGTGTAACCCAATTTcaa                                                                                  >  2:257607/2‑150 (MQ=255)                                                       ccACGCCGCCCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATGGTGTAACCCAATTTcaagaacaa                                                                            >  1:484983/1‑150 (MQ=255)                                                           gccgccCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACaagaag                                                                        <  2:484983/150‑1 (MQ=255)                                                                               gCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATgcccgctcccacagagggcggcgtggcgcctcaagtgggtgtcgttcatcacctttacgttaac                                                                           <  2:116076‑M2/127‑65 (MQ=255)                                                                               gCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATgcccgctcccacagagggcggcgtggcgcctcaagtgggtgtcgttcatcacctttacgttaac                                                                           >  1:116076‑M2/1‑63 (MQ=255)                                                                                    cccGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACccctcc                                               >  2:135821/1‑150 (MQ=255)                                                                                     ccGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGTGCGGGGCCGGATCCCAAGCTATg                                                                                                   <  2:276050/97‑1 (MQ=255)                                                                                     ccGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGCGGCGGGGCCGGATCCCAAGCTATg                                                                                                   >  1:276050/1‑97 (MQ=255)                                                                                       gcgAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATgcccgctcccacagagggcggcgtggcgcctcaagtgggtgtcgttcatcacctttacgttaacgtaaacctgcatgagggt                                                         >  1:83312‑M2/1‑55 (MQ=255)                                                                                       gcgAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATgcccgctcccacagagggcggcgtggcgcctcaagtgggtgtcgttcatcacctttacgttaacgtaaacctgcatgagggt                                                         <  2:83312‑M2/137‑83 (MQ=255)                                                                                                aCCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCCTCCCTGAACTTCGcc                                   >  2:403212/1‑150 (MQ=255)                                                                                                             tGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCCTCCCTGaa                                          <  2:157035/130‑1 (MQ=255)                                                                                                             tGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCCTCCCTGaa                                          >  1:157035/1‑130 (MQ=255)                                                                                                                        ctgctgACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCCTCCCTGAACTTCGCCCTGGGCGAGACCATCGACATGCTc           <  2:79755/150‑1 (MQ=255)                                                                                                                            tgACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCCTCCCTGAACTTCGCCCTGGGCGAGACCATCGACATGCTCcgcg       >  1:99738/1‑150 (MQ=255)                                                                                                                                 tATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCCTCCCTGAACTTCGCCCTGGGCGAGACCATCGACATGCTCCGCGACCAg  <  2:2603/150‑1 (MQ=255)                                                                                                                                             |                                                                                                                                          CCTCATGCAGGTTTACGTTAACGTAAAGGTGATGAACGACACCCACTTGAGGCGCCACGCCGCCCTCTGTGGGAGCGGGCTTGCCCGCGAATGCGACCAATCAGGTAATGACGGTGACCCTGCTGACGTATTCGCGGGCATGCCCGCTCCCACAGGGGGCGGGGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCCTCCCTGAACTTCGCCCTGGGCGAGACCATCGACATGCTCCGCGACCAG  >  NC_002947/4587964‑4588241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.