New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4586100	23 (0.520)	8 (0.250)	8/198	2.8	34.3%	intergenic (+139/+78)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586128	14 (0.440)					intergenic (+167/+50)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase

GGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGC‑CCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTA  >  NC_002947/4585979‑4586264                                                                                                                                                       |                                                                                                                                          ggCCTGAACAGCTGATCTCCGACGTGCGATCTTAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGAGCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGc                                                                                                                                           <  1:1037410/150‑1 (MQ=37)     tGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccct                                                                                                                                       <  1:426059‑M2/150‑5 (MQ=255)      gAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGGAAACCGGCTCGTACCAGTGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctg                                                                                                                                      >  2:122528‑M2/1‑145 (MQ=255)          aGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtag                                                                                                                                  >  2:610727‑M2/1‑141 (MQ=255)             tGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggag                                                                                                                               <  2:907168‑M2/150‑13 (MQ=255)                tCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGGCAGCGCCG‑CATTCAAGGCCGGCACGGTccctggtaggagcgg                                                                                                                            >  2:686906‑M2/1‑135 (MQ=255)                 cTGCGCTGCTCGATGGAAAGTTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccatggtaggagcggg                                                                                                                           >  2:62577‑M2/1‑134 (MQ=255)                      ctgctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttac                                                                                                                      >  2:426059‑M2/1‑129 (MQ=255)                             aTTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaa                                                                                                               <  1:169885‑M2/150‑29 (MQ=255)                               tGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaaga                                                                                                             >  1:588600‑M2/1‑120 (MQ=255)                                gAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagag                                                                                                            >  1:907168‑M2/1‑119 (MQ=255)                                  aaGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggc                                                                                                          >  2:169885‑M2/1‑117 (MQ=255)                                  aaGGTTGACGAGGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATCGATCGGGCCGGCCTCTTCGCCGGTCCAATCCCTCCTAACAAGG‑CCTGGCTCGCTTTCTGGTC‑GGCCATGCTCACCGGTAGGAGCGGGTTTTCCCGCGGAGAggc                                                                                                         <  2:11102/150‑1 (MQ=255)                                          ggATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttac                                                                                                                      >  1:483872‑M2/1‑109 (MQ=255)                                          ggATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttac                                                                                                                      <  2:483872‑M2/130‑22 (MQ=255)                                                  gggTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGC‑GCGTGGTAGAAACGGGTGTACCCGCGAAGAGGCCGGCCGCGCCAGcaca                                                                                         >  1:235989/1‑150 (MQ=38)                                                                       tCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtag                                                                                                                                  >  2:785743‑M2/1‑80 (MQ=255)                                                                       tCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtag                                                                                                                                  <  1:785743‑M2/89‑10 (MQ=255)                                                                             aTTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttac                                                                                                                      <  2:947293‑M2/95‑22 (MQ=255)                                                                             aTTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttac                                                                                                                      >  1:947293‑M2/1‑74 (MQ=255)                                                                                        cggccTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGC‑CCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGa                                                   >  1:243406/1‑150 (MQ=255)                                                                                             tctTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGC‑CCATGGTAGGAGCGGGTTTACACGCGAAGGGGCCGGCCGCACGAGCACATCAACCCGCCGAAGCAGCCGCAATCTCCGCCACACTGAtctcc                                              >  2:144172/1‑149 (MQ=37)                                                                                                           cccGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGC‑CCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCGGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACtt                                >  2:524540/1‑150 (MQ=255)                                                                                                           cccGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGC‑CCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACtt                                >  2:36488/1‑150 (MQ=255)                                                                                                            ccGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcaga                                <  1:1030680‑M2/150‑108 (MQ=255)                                                                                                            ccGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGC‑CCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGaa                                   >  2:595452/1‑146 (MQ=255)                                                                                                            ccGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGC‑CCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGaa                                   <  1:595452/146‑1 (MQ=255)                                                                                                            ccGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGC‑CCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTc                               >  2:491876/1‑150 (MQ=255)                                                                                                            ccGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGC‑CCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTc                               >  2:170267/1‑150 (MQ=255)                                                                                                               cTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGC‑CCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGc                            <  1:491876/150‑1 (MQ=255)                                                                                                                   tACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctg                         <  1:686601‑M2/150‑115 (MQ=255)                                                                                                                    aCCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgt                        <  2:181181‑M2/150‑116 (MQ=255)                                                                                                                      cAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgc                                                                                           >  2:319142‑M2/1‑33 (MQ=255)                                                                                                                      cAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgc                                                                                           <  1:319142‑M2/81‑49 (MQ=255)                                                                                                                      cAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGC‑CCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAAc                                  >  2:271158/1‑137 (MQ=255)                                                                                                                      cAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGC‑CCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAAc                                  <  1:271158/137‑1 (MQ=255)                                                                                                                        gggACCGTGCCGGCCTTGAATGC‑GGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcac                    <  1:88205‑M2/150‑120 (MQ=255)                                                                                                                           aCCGTGCCGGCCTTGAATGC‑GGCGCGGTccctggtaggagcgggtttacccgcgaagaggccggcccgatcaat                                                                                             >  2:461852‑M2/1‑28 (MQ=255)                                                                                                                           aCCGTGCCGGCCTTGAATGC‑GGCGCGGTccctggtaggagcgggtttacccgcgaagaggccggcccgatcaat                                                                                             <  1:461852‑M2/74‑47 (MQ=255)                                                                                                                                    gCCTTGAATGC‑GGCGCTGC‑CCCTGGTAGGAGCGGGATTACACCCCCCGAGGCCGTCGGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCAAGCGGAACATCTGCACCTTGCCGGTCACGGTCATc       >  1:989482/1‑150 (MQ=255)                                                                                                                                         gAATGC‑GGCGCTGC‑CCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTa  <  2:243406/150‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                          GGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGC‑GGCGCTGC‑CCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTA  >  NC_002947/4585979‑4586264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.