| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 661596 | 31 (1.410) | 3 (0.140) | 3/246 | NT | 9.7% | intergenic (+103/+24) | PP_0568/PP_0569 | hypothetical protein/MATE efflux family protein |
| ? | NC_002947 | = 661622 | 26 (1.230) | coding (1336/1338 nt) | PP_0569 | MATE efflux family protein | |||||
TGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCAC > NC_002947/661447‑661745 | tGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGC < 2:302141‑M1/150‑1 (MQ=255) cTGTCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGAAGACCGACCCGCTAACCCATGAGGATGCCGCCGGTCGTCGCGATGGGCCg > 1:443161/1‑150 (MQ=255) gAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGGCGCAAAg > 1:417613/1‑150 (MQ=255) aTCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGc < 1:77846/150‑1 (MQ=255) ccATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAg < 1:234050/142‑1 (MQ=255) ccATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAg > 2:234050/1‑142 (MQ=255) gggACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAg > 1:325512‑M2/1‑149 (MQ=255) ggACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAgc > 1:140517‑M2/1‑148 (MQ=255) ggACTGTGTATGGCTGGGAGCATGTGAGGGCGTCGCCCTCATTTCGCGCCACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCCTGTGGGCGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAgc > 2:538807‑M2/1‑148 (MQ=255) cTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCgg > 1:287627/1‑136 (MQ=255) cTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCgg < 2:287627/136‑1 (MQ=255) cTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGCGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAgcgac < 1:320423‑M2/150‑6 (MQ=255) tgtgTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAgcgacc < 1:343408‑M2/150‑7 (MQ=255) tGGCTGTGGGCAGGTGAGGGCGTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTAGCCCATGTGGGAGCGGACACACGGCCCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAg < 2:443161/150‑1 (MQ=255) tGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCtgattggggccgctttgcggcccatcgcgacgcaaggc < 2:101997‑M1/150‑39 (MQ=255) tGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAg > 2:51271/1‑150 (MQ=255) ggCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGa > 2:49322/1‑113 (MQ=255) ggCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGa < 1:49322/113‑1 (MQ=255) gCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTctg > 1:92244/1‑150 (MQ=255) gAGGGTGTCGCCCTGATTTTGCTGCACAAGGCCTTTCCCACAGTGACCGGGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCGGCCAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCtgctgcca < 2:12091/150‑3 (MQ=255) aGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAAc < 2:52046/150‑1 (MQ=255) ggCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATc > 1:548209/1‑119 (MQ=255) ggCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATc < 2:548209/119‑1 (MQ=255) ccTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCacccaa > 1:335754/1‑150 (MQ=255) cTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAACCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGGAACCGCCacccaac > 1:255481/1‑150 (MQ=255) cTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCAGCTCTCGCATGTGGGAGCCCCGGGGCGTCGCTATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCacccaac > 1:492406/1‑150 (MQ=255) gcgACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGc < 1:527793/92‑1 (MQ=255) gcgACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGc > 2:527793/1‑92 (MQ=255) aaGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGc > 2:305159/1‑88 (MQ=255) aaGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGc < 1:305159/88‑1 (MQ=255) aaGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGa < 2:122833/150‑1 (MQ=255) cccGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCca > 2:381588/1‑150 (MQ=255) ccGCCATCCCATGTGGGAGCGGCCTTGCGTCGCGATGAGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTACAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAAACCCAAAAAAAAAAGAAACACCATCcac > 2:175537/1‑150 (MQ=38) cccATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCAt < 1:51271/150‑1 (MQ=255) cATGTGGGAGCGGCGTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACACGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATgg > 1:164734/1‑150 (MQ=255) cATGTGGGAGCGGCCTTGCGTCGCtgattggggccgctttgcggcccatcgcgac < 2:266758‑M1/55‑32 (MQ=255) cATGTGGGAGCGGCCTTGCGTCGCtgattggggccgctttgcggcccatcgcgac > 1:266758‑M1/1‑24 (MQ=255) cATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATgg < 2:230161/150‑1 (MQ=255) gtgGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTg < 2:96936/150‑1 (MQ=255) gAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCAACCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCa > 1:293285/1‑150 (MQ=255) gCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGCAACGCCATCCACAACCCATGGTTGCCCAAc < 2:207832/150‑1 (MQ=255) gCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAAc < 2:92244/150‑1 (MQ=255) gCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAgcgacgcaaggccgctcccacatgggatagcgggtcggcctgctttcgcggtcactgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagcca < 2:101997‑M2/150‑113 (MQ=255) ggtCGCtgattggggccgctttgcggcccatcgcgacgcaaggccgctcccacatgggatagcgggtcggcctgctttcgcggtcactgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagccatacaca < 1:343408‑M1/149‑145 (MQ=255) gTCGCtgattggggccgctttgcggcccatcgcgacgcaaggccgctcccgcatgggatagcgggtcggcctgctttcgcggtcactgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagccatacacag < 1:320423‑M1/150‑146 (MQ=255) gTCGCGATGGGCCGCAAAGCGGCCCCAATCAgcgacgcaaggccgctcccacatg > 1:266758‑M2/1‑31 (MQ=255) gTCGCGATGGGCCGCAAAGCGGCCCCAATCAgcgacgcaaggccgctcccacatg < 2:266758‑M2/55‑25 (MQ=255) gCtgattggggccgctttgcggcccatcgcgacgcaaggccgctcccacatgggatagcgggtcggcctgctttcgcggtcactgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagccatacacagtcc > 1:140517‑M1/1‑2 (MQ=255) gCtgattggggccgctttgcggcccatcgcgacgcaaggccgcgcccacaggggatagcgggtcggcctgctttcgcggtcactgtgggagcggccttgtggcgcgaaatgagggcgacgccctcacatgctcccagccatacacagtcc > 2:538807‑M1/1‑2 (MQ=255) ctgattggggccgctttgcggcccatcgcgacgcaaggccgctcccacatgggatagcgggtcggcctgctttcgcggtcactgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagccatacacagtccc > 1:325512‑M1/1‑1 (MQ=255) | TGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCAC > NC_002947/661447‑661745 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |