New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 661596	31 (1.410)	3 (0.140)	3/246	NT	9.7%	intergenic (+103/+24)	PP_0568/PP_0569	hypothetical protein/MATE efflux family protein
	?	NC_002947	= 661622	26 (1.230)					coding (1336/1338 nt)	PP_0569	MATE efflux family protein

GGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACTGCCACCGGCAGCGCAATCAA  >  NC_002947/661474‑661766                                                                                                                                                     |                                                                                                                                                 gggACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAg                                                                                                                                                 >  1:325512‑M2/1‑149 (MQ=255)  ggACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAgc                                                                                                                                                >  1:140517‑M2/1‑148 (MQ=255)  ggACTGTGTATGGCTGGGAGCATGTGAGGGCGTCGCCCTCATTTCGCGCCACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCCTGTGGGCGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAgc                                                                                                                                                >  2:538807‑M2/1‑148 (MQ=255)     cTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGCGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAgcgac                                                                                                                                             <  1:320423‑M2/150‑6 (MQ=255)      tgtgTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAgcgacc                                                                                                                                            <  1:343408‑M2/150‑7 (MQ=255)            tGGCTGTGGGCAGGTGAGGGCGTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTAGCCCATGTGGGAGCGGACACACGGCCCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAg                                                                                                                                      <  2:443161/150‑1 (MQ=255)            tGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAg                                                                                                                                      >  2:51271/1‑150 (MQ=255)                     gCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTctg                                                                                                                             >  1:92244/1‑150 (MQ=255)                           gAGGGTGTCGCCCTGATTTTGCTGCACAAGGCCTTTCCCACAGTGACCGGGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCGGCCAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCtgctgcca                                                                                                                       <  2:12091/150‑3 (MQ=255)                            aGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAAc                                                                                                                      <  2:52046/150‑1 (MQ=255)                                      ccTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCacccaa                                                                                                            >  1:335754/1‑150 (MQ=255)                                       cTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAACCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGGAACCGCCacccaac                                                                                                           >  1:255481/1‑150 (MQ=255)                                       cTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCAGCTCTCGCATGTGGGAGCCCCGGGGCGTCGCTATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCacccaac                                                                                                           >  1:492406/1‑150 (MQ=255)                                                                               aaGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGa                                                                   <  2:122833/150‑1 (MQ=255)                                                                                          cccGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCca                                                        >  2:381588/1‑150 (MQ=255)                                                                                           ccGCCATCCCATGTGGGAGCGGCCTTGCGTCGCGATGAGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTACAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAAACCCAAAAAAAAAAGAAACACCATCcac                                                       >  2:175537/1‑150 (MQ=38)                                                                                                  cccATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCAt                                                <  1:51271/150‑1 (MQ=255)                                                                                                    cATGTGGGAGCGGCGTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACACGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATgg                                              >  1:164734/1‑150 (MQ=255)                                                                                                    cATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATgg                                              <  2:230161/150‑1 (MQ=255)                                                                                                       gtgGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTg                                           <  2:96936/150‑1 (MQ=255)                                                                                                           gAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCAACCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCa                                       >  1:293285/1‑150 (MQ=255)                                                                                                             gCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGCAACGCCATCCACAACCCATGGTTGCCCAAc                                     <  2:207832/150‑1 (MQ=255)                                                                                                             gCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAAc                                     <  2:92244/150‑1 (MQ=255)                                                                                                                gCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAgcgacgcaaggccgctcccacatgggatagcgggtcggcctgctttcgcggtcactgtgggagcggccttgtgtcgcgaaatgagggcgaagccctcacatgctcacagcca                                  <  2:101997‑M2/150‑113 (MQ=255)                                                                                                                       gTCGCGATGGGCCGCAAAGCGGCCCCAATCAgcgacgcaaggccgctcccacatg                                                                                                                          <  2:266758‑M2/55‑25 (MQ=255)                                                                                                                       gTCGCGATGGGCCGCAAAGCGGCCCCAATCAgcgacgcaaggccgctcccacatg                                                                                                                          >  1:266758‑M2/1‑31 (MQ=255)                                                                                                                                   cGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATc                                                          >  2:256538/1‑107 (MQ=255)                                                                                                                                   cGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATc                                                          <  1:256538/107‑1 (MQ=255)                                                                                                                                   cGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCCCTGCCACCg               >  2:150263/1‑150 (MQ=255)                                                                                                                                      aaaGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACTGCCACCGGCa            <  2:320423/150‑1 (MQ=255)                                                                                                                                      aaaGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACTGCCACCGGCa            <  2:335754/150‑1 (MQ=255)                                                                                                                                         gCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACTGCCACCGGCAgcg         >  1:530309/1‑150 (MQ=255)                                                                                                                                              cccAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACTGCCACCGGCAGCGCAATc    >  2:533864/1‑150 (MQ=255)                                                                                                                                                cAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACTGCCACCGGCAGCGCAATCaa  <  2:492406/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCGCAAAGCGGCCCCAATCAGCGACACCACAGGTCTCTCTGCTGCAACCGCCACCCAACCCACCCCAACGTCACCGCCCGCAACCCCATGAACCCAAGAAACGCCATCCACAACCCATGGTTGCCCAACCCGCTCATGGCCACTGCCACCGGCAGCGCAATCAA  >  NC_002947/661474‑661766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.