New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1264252	28 (1.270)	4 (0.190)	4/244	NT	12.8%	coding (161/1659 nt)	PP_1105	ATP‑dependent DNA ligase
	?	NC_002947	= 1264274	28 (1.330)					coding (139/1659 nt)	PP_1105	ATP‑dependent DNA ligase

CCAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGC  >  NC_002947/1264109‑1264400                                                                                                                                                |                                                                                                                                                     ccAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCa                                                                                                                                                >  1:489267/1‑150 (MQ=255) ccAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGGGCTCAGTTCGCGTAGAAGGCGGGTGGGCa                                                                                                                                                <  1:15039/150‑1 (MQ=255)     gCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAg                                                                                                                                            >  2:550299/1‑150 (MQ=255)              gTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTgg                                                                                                                                   <  1:550299/150‑1 (MQ=255)              gTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCCGAGAAGGCGGGTGGGCACCAGCTGGCGTgg                                                                                                                                   <  1:14776/150‑1 (MQ=255)                   cATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGcc                                                                                                                              <  2:453145‑M2/150‑3 (MQ=255)                    aTCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGccc                                                                                                                             >  2:488662‑M2/1‑147 (MQ=255)                                        gcagcGAAAGGGGCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAACCAGGTCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCg                                                                                                         <  2:77416/150‑1 (MQ=255)                                              aaaTGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGcgcccacgccagctggtgcccacccgccttctac                                                                                                                    >  2:80677‑M1/1‑99 (MQ=255)                                              aaaTGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGcgcccacgccagctggtgcccacccgccttctac                                                                                                                    <  1:80677‑M1/133‑35 (MQ=255)                                                    tctcGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCAt                                                                                             >  1:163923/1‑150 (MQ=255)                                                    tctcGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGCGGGCACCAGCTGGAGTGCGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCAt                                                                                             >  2:555837/1‑150 (MQ=255)                                                     ctcGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATc                                                                                            >  1:559418/1‑150 (MQ=255)                                                         gCCAGGTCGCCCAACACCTGATAGCGTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTcg                                                                                        >  2:139573/1‑150 (MQ=255)                                                                        gCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTcggc                                                                                      <  2:519387/137‑1 (MQ=255)                                                                        gCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTcggc                                                                                      >  1:519387/1‑137 (MQ=255)                                                                         ccTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGa                                                                        >  2:418864/1‑150 (MQ=255)                                                                          cTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACAACGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGaa                                                                       <  1:555837/150‑1 (MQ=255)                                                                                  tttCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTcgc                                                               >  1:475199/1‑150 (MQ=255)                                                                                       tcGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGt                                                          >  1:295181/1‑150 (MQ=255)                                                                                            aaGCCAGTCCGGCAGGCCACCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTc                                                     <  2:371582/150‑1 (MQ=255)                                                                                               ccAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAg                                                  >  1:466640/1‑150 (MQ=255)                                                                                                 aGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGcgcccacgccagctggtgcccacccgcctt                                                                                                                        >  1:485488‑M1/1‑48 (MQ=255)                                                                                                 aGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGcgcccacgccagctggtgcccacccgcctt                                                                                                                        <  2:485488‑M1/78‑31 (MQ=255)                                                                                                   tCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTg                                              <  2:466640/150‑1 (MQ=255)                                                                                                                   gcGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAggtgg                              <  2:475199/150‑1 (MQ=255)                                                                                                                           gCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAgg                                 <  2:346474/139‑1 (MQ=255)                                                                                                                           gCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAgg                                 >  1:346474/1‑139 (MQ=255)                                                                                                                                  cgcgTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCa               <  1:139573/150‑1 (MQ=255)                                                                                                                                    cgTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAgg             <  2:163923/150‑1 (MQ=255)                                                                                                                                     gTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGcccgccttctacgcgaactggcgacgacgctggctggcctgccggactggcttttcgaagaaagctatcaggccgtgggcgacctggccgagaccattt                             <  1:80677‑M2/133‑100 (MQ=255)                                                                                                                                     gTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGcccgccttctacgcgaactggcgacgacgctggctggcctgccggactggcttttcgaagaaagctatcaggccgtgggcgacctggccgagaccattt                             >  2:80677‑M2/1‑34 (MQ=255)                                                                                                                                      tAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAACATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGaa           >  2:108954/1‑150 (MQ=255)                                                                                                                                        gAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACa         <  1:472029/150‑1 (MQ=255)                                                                                                                                        gAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACa         <  2:559418/150‑1 (MQ=255)                                                                                                                                        gAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACa         <  2:295181/150‑1 (MQ=255)                                                                                                                                         aaGGCGGGTGGGCACCAGCTGGCGTGGGCGcccgccttctacgcgaactggcgacgacgctggctggcctgccggact                                                                                <  2:485488‑M2/78‑49 (MQ=255)                                                                                                                                         aaGGCGGGTGGGCACCAGCTGGCGTGGGCGcccgccttctacgcgaactggcgacgacgctggctggcctgccggact                                                                                >  1:485488‑M2/1‑30 (MQ=255)                                                                                                                                             cGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTa    <  1:453145/150‑1 (MQ=255)                                                                                                                                             cGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTa    <  1:418864/150‑1 (MQ=255)                                                                                                                                              gggcgcccacgccagctggtgcccacccgccttctacgcgaactggcgacgacgctggctggcctgccggactggcttttcgaagaaagctatcaggccgtgggcgacctggccgagaccatttcgctgctgctgccgctgcacgccgat   >  2:488662‑M1/1‑3 (MQ=255)                                                                                                                                               ggcgcccacgccagctggtgcccacccgccttctacgcgaactggcgacgacgctggctggcctgccggactggcttttcgaagaaagctatcaggccgtgggcgacctggccgagaccatttcgctgctgctgccgctgcacgccgatg  <  2:453145‑M1/150‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     CCAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGC  >  NC_002947/1264109‑1264400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.