New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1264252 | 28 (1.270) | 4 (0.190) | 4/244 | NT | 12.8% | coding (161/1659 nt) | PP_1105 | ATP‑dependent DNA ligase |
? | NC_002947 | = 1264274 | 28 (1.330) | coding (139/1659 nt) | PP_1105 | ATP‑dependent DNA ligase |
CATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGC > NC_002947/1264127‑1264423 | cATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGcc < 2:453145‑M2/150‑3 (MQ=255) aTCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGccc > 2:488662‑M2/1‑147 (MQ=255) gcagcGAAAGGGGCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAACCAGGTCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCg < 2:77416/150‑1 (MQ=255) tctcGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCAt > 1:163923/1‑150 (MQ=255) tctcGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGCGGGCACCAGCTGGAGTGCGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCAt > 2:555837/1‑150 (MQ=255) ctcGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATc > 1:559418/1‑150 (MQ=255) gCCAGGTCGCCCAACACCTGATAGCGTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTcg > 2:139573/1‑150 (MQ=255) gCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTcggc < 2:519387/137‑1 (MQ=255) gCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTcggc > 1:519387/1‑137 (MQ=255) ccTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGa > 2:418864/1‑150 (MQ=255) cTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACAACGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGaa < 1:555837/150‑1 (MQ=255) tttCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTcgc > 1:475199/1‑150 (MQ=255) tcGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGt > 1:295181/1‑150 (MQ=255) aaGCCAGTCCGGCAGGCCACCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTc < 2:371582/150‑1 (MQ=255) ccAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAg > 1:466640/1‑150 (MQ=255) tCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTg < 2:466640/150‑1 (MQ=255) gcGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAggtgg < 2:475199/150‑1 (MQ=255) gCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAgg > 1:346474/1‑139 (MQ=255) gCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAgg < 2:346474/139‑1 (MQ=255) cgcgTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCa < 1:139573/150‑1 (MQ=255) cgTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAgg < 2:163923/150‑1 (MQ=255) gTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGcccgccttctacgcgaactggcgacgacgctggctggcctgccggactggcttttcgaagaaagctatcaggccgtgggcgacctggccgagaccattt < 1:80677‑M2/133‑100 (MQ=255) gTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGcccgccttctacgcgaactggcgacgacgctggctggcctgccggactggcttttcgaagaaagctatcaggccgtgggcgacctggccgagaccattt > 2:80677‑M2/1‑34 (MQ=255) tAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAACATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGaa > 2:108954/1‑150 (MQ=255) gAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACa < 2:295181/150‑1 (MQ=255) gAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACa < 1:472029/150‑1 (MQ=255) gAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACa < 2:559418/150‑1 (MQ=255) aaGGCGGGTGGGCACCAGCTGGCGTGGGCGcccgccttctacgcgaactggcgacgacgctggctggcctgccggact > 1:485488‑M2/1‑30 (MQ=255) aaGGCGGGTGGGCACCAGCTGGCGTGGGCGcccgccttctacgcgaactggcgacgacgctggctggcctgccggact < 2:485488‑M2/78‑49 (MQ=255) cGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTa < 1:453145/150‑1 (MQ=255) cGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTa < 1:418864/150‑1 (MQ=255) gCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGc > 1:175387/1‑150 (MQ=255) tGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAg > 2:266230/1‑114 (MQ=255) tGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAg < 1:266230/114‑1 (MQ=255) gcccgccGGCCAGGAAATACACCGCCCAGGCAGAATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGc > 1:146522/1‑150 (MQ=255) | CATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGC > NC_002947/1264127‑1264423 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |