New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4087738 =	27 (1.230)	4 (0.200)	4/238	NT	15.1%	intergenic (+343/‑83)	PP_3597/PP_3598	amino acid ABC transporter ATP‑binding protein/peptidase C26
	?	NC_002947	4087773 =	20 (0.980)					intergenic (+378/‑48)	PP_3597/PP_3598	amino acid ABC transporter ATP‑binding protein/peptidase C26

CCGCATCGGTTTCAGCCCCCAGAAAACGGCGTATCCCCCGCGTTAAAGCCCGCTTCCGTCGTTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTGCGCAAACCCGTCGTCCTGATGACC  >  NC_002947/4087602‑4087883                                                                                                                                         |                                                                                                                                                  ccGCATCGGTTTCAGCCCCCAGAAAACGGCGTATCCCCCTCGTTAAAGCCCGCTTCCGTCGTTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAg                                                                                                                                      >  2:384211/1‑150 (MQ=255) ccGCATCGGTTTCAGCCCCCAGAAAACGGCGTATCCCCCGCGTTAAAGCCCGCTTCCGTCGTTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAg                                                                                                                                      <  1:370719/150‑1 (MQ=255)         gTTTCAGCCCCCAGAAAACGGCGTATCCCCCGCGTTAAAGCCCGCTTCCGTCGTTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCACCTCTGACGAGCCGGCAGTGCCCGGGGCTACAGGCAGCAcc                                                                                                                              >  2:415495/1‑150 (MQ=255)          tttCAGCCCCCAGAAAACGGCGTATCCCCCGCGTTAAAGCCCGCTTCCGTCGTTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCAccc                                                                                                                             >  1:61087/1‑150 (MQ=255)            tCAGCCCCCAGAAAACGGCGTATCCCCCGCGTTAAAGCCCGCTTGCGTCGTTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCaa                                                                                                                           <  2:407976/150‑1 (MQ=255)             cAGCCCCCAGAAAACGGCGTATCCCCCTCGTTAAAGCCCGCTTCCGTCGTTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAg                                                                                                                          <  1:384211/150‑1 (MQ=255)                            tcatcaggacgacgggtttgcgcagggaaggttgcttgttgccaatgttgctgttggacatatgtcaccttgggacaggttcgacctgtcgttgttgtgcaggcgcacgGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTg                                                                                                             <  2:89908‑M1/39‑1 (MQ=255)                            tcatcaggacgacgggtttgcgcagggaaggttgcttgttgccaatgttgctgttggacatatgtcaccttgggacaggttcgacctgtcgttgttgtgcaggcgcacgGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTg                                                                                                             >  1:89908‑M1/110‑148 (MQ=255)                               gTATCCCCCGCGTTAAAGCCCGCTTCCGTCGTTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCt                                                                                                        <  1:221883/150‑1 (MQ=255)                                   cccccGCGTTAAAGCCCGCTTCCGTCGTTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGcac                                                                                                    >  1:248903/1‑150 (MQ=255)                                     cccGCGTTAAAGCCCGCTTCCGTCGTTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCacaa                                                                                                  >  1:83551/1‑150 (MQ=255)                                                     cTTCCGTCCTTTGACATATCCAACGACTATGGCAAGCTATCTACAAGCCCCGACCGGAACCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAAc                                                                                  <  1:415495/150‑1 (MQ=255)                                                         cctcgtTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGt                                                                              <  1:71194/148‑1 (MQ=255)                                                          gtcgtTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTc                                                                             <  2:61087/150‑1 (MQ=255)                                                           tcgtTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTcc                                                                            <  1:129804/150‑1 (MQ=255)                                                             gtTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGt                                                                                                              >  2:511978/1‑114 (MQ=255)                                                             gtTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGt                                                                                                              <  1:511978/114‑1 (MQ=255)                                                               ttGACATATCAATCNGCTCTGGCAAGCTATCTACAAGNCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCNAGCCGTGCGCCGTCACAACAACGACAGGTCGAACCTGTCCCANg                                                                        <  1:87508/150‑1 (MQ=255)                                                                      atCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAg                                                                        <  1:357612/143‑1 (MQ=255)                                                                      atCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAg                                                                        >  2:357612/1‑143 (MQ=255)                                                                       aatgttgctgttggacatatgtcaccttgggacaggttcgacctgtcgttgttgtgcaggcgcacgGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGa                                                                                                                   <  1:107541‑M1/33‑1 (MQ=255)                                                                       aatgttgctgttggacatatgtcaccttgggacaggttcgacctgtcgttgttgtgcaggcgcacgGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGa                                                                                                                   >  2:107541‑M1/67‑99 (MQ=255)                                                                                         cTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAg                                                                                                                                      >  1:49524/1‑62 (MQ=255)                                                                                         cTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAg                                                                                                                                      <  2:49524/62‑1 (MQ=255)                                                                                                cAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGcaacaa                                       >  2:512659/1‑150 (MQ=255)                                                                                                     cccGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCGACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAAc                                  >  1:272291/1‑150 (MQ=255)                                                                                                            ggAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTc                                                                                      <  2:102394/91‑1 (MQ=255)                                                                                                            ggAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTc                                                                                      >  1:102394/1‑91 (MQ=255)                                                                                                                        tctGACGAGCCGGCAGTGCTAGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTGCGCAAACCcgt               <  2:272291/150‑1 (MQ=255)                                                                                                                                gCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACat                                                                 >  2:556382/1‑92 (MQ=255)                                                                                                                                gCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACat                                                                 <  1:556382/92‑1 (MQ=255)                                                                                                                                     cAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTGCGCAAACCCGTCGTCCTGATGAcc  <  1:513789/150‑1 (MQ=255)                                                                                                                                         |                                                                                                                                                  CCGCATCGGTTTCAGCCCCCAGAAAACGGCGTATCCCCCGCGTTAAAGCCCGCTTCCGTCGTTTGACATATCGAACGGCTCTGGCAAGCTATCTACAAGCCCCGACCGGAATCGTCGCCTCTGACGAGCCGGCAGTGCTCGGGGCTACAGGCAGCACCCAAGGCCCCGAGCCGTGCGCCTGCACAACAACGACAGGTCGAACCTGTCCCAAGGTGACATATGTCCAACAGCAACATTGGCAACAAGCAACCTTCCCTGCGCAAACCCGTCGTCCTGATGACC  >  NC_002947/4087602‑4087883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.