New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5692608 =	30 (1.360)	5 (0.250)	5/234	NT	18.1%	intergenic (+21/‑149)	PP_4994/PP_4995	hypothetical protein/exopolysaccharide biosynthesis protein
	?	NC_002947	5692692 =	18 (0.890)					intergenic (+105/‑65)	PP_4994/PP_4995	hypothetical protein/exopolysaccharide biosynthesis protein

GGCGCAACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCC  >  NC_002947/5692461‑5692734                                                                                                                                                    |                                                                                                                               ggcgCAACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGAGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCtt                                                                                                                              >  2:28354/1‑150 (MQ=255)    gggcgaagttcggatcggccatgtgcggcatggcgatcaggaactggtgcttgaggtagctgggtgcgagggttttcatgggggatagtgtggcgccaggtggcgagactgacaaggtgggctttgtgtcgcttttgccagcccCTTcgc                                                                                                                           >  1:419350‑M1/145‑150 (MQ=255)     ggcgaagttcggatcggccatgtgcggcatggcgatcaggaactggtgcttgaggtagctgggtgcgagggttttcatgggggatagtgtggcgccaggtggcgagactgacaaggtgggctttgtgtcgcttttgccagcccCTTcgcg                                                                                                                          >  2:508390‑M1/144‑150 (MQ=255)     ggcgaagttcggatcggccatgtgcggcatggcgatcaggaactggtgcttgaggtagctgcgtgcgagggttttcatgggggatattgtggcgccaggtggcgagactgacaaggtggacttggtgtcgcttttgccagcccCTTcgcg                                                                                                                          >  1:438927‑M1/144‑150 (MQ=255)       cgaagttcggatcggccatgtgcggcatggcgatcaggaactggtgcttgaggtagctgggtgcgagggttttcatgggggatagtgtggcgccaggtggcgagactgacaaggtgggctttgtgtcgcttttgccagcccCTTCGCggg                                                                                                                        <  1:42832‑M1/9‑1 (MQ=255)           aTCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCCGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACg                                                                                                                    >  2:387345/1‑150 (MQ=255)              gTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGccc                                                                                                                 >  1:528663/1‑150 (MQ=255)                   gCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGCGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTcc                                                                                                            <  2:452435/150‑1 (MQ=255)                    cTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTccc                                                                                                           >  2:362123/1‑150 (MQ=255)                             ccGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGc                                                                                                  >  2:225027/1‑150 (MQ=255)                                tcggCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCa                                                                                               >  1:443273/4‑150 (MQ=255)                                    cACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACGGGTTGTCCAGTCACTGATTTTGTGCATGGGCCGGCCGCGTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCgg                                                                                           >  1:127558/1‑150 (MQ=255)                                           ggaactggtgcttgaggtagctgggtgcgagggttttcatgggggatagtgtggcgccaggtggcgagactgacaaggtgggctttgtgtcgcttttgccggcctCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGaa                                                                                    <  1:7866‑M1/45‑1 (MQ=255)                                            aCCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAg                                                                                   <  1:4769/150‑1 (MQ=255)                                             ccGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGc                                                                                  <  2:443273/150‑1 (MQ=255)                                                 ggATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCtgt                                                                              <  2:390184/150‑1 (MQ=255)                                                    tCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCTCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGa                                                                           <  1:456027/150‑1 (MQ=255)                                                          cGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATcg                                                                     >  2:478205/1‑150 (MQ=255)                                                             agctgggtgcgagggttttcatgggggatagtgtggcgccaggtggcgagactgacaaggtgggctttgtgtcgcttttgccagcccCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATcggcg                                                                  <  1:446550‑M1/63‑1 (MQ=255)                                                              ttCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATcggcgg                                                                 <  1:84549/150‑1 (MQ=255)                                                                 gACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAg                                                              <  2:382883/150‑1 (MQ=255)                                                                 gACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCACTGAAGCCtgtg                                                                             >  1:57058/1‑135 (MQ=255)                                                                 gACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCACTGAAGCCtgtg                                                                             <  2:57058/135‑1 (MQ=255)                                                                         gggttttcatgggggatagtgtggcgccaggtggcgagactgacaaggtgggctttgtgtcgcttttgccagcccCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATg                                                      >  2:446550‑M1/76‑150 (MQ=255)                                                                         ggAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATg                                                      <  1:478205/150‑1 (MQ=255)                                                                                  tgggggatagtgtggcgccaggtggcgagactgacaaggtgggctttgtgtcgcttttgccagcccCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAg                                             >  2:42832‑M1/67‑150 (MQ=255)                                                                                    gCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAGGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAggg                                           <  1:235667/150‑1 (MQ=255)                                                                                    gCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGaa                                              <  2:315537/147‑1 (MQ=255)                                                                                    gCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGaa                                              >  1:315537/1‑147 (MQ=255)                                                                                    gCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAggg                                           >  1:414233/1‑150 (MQ=255)                                                                                      aCCTGGTGCTTTGCCCGTGGGGACCGTTTGTCAAGTAACTGATTTTCTGCATGTGCCGGCCTTTTCGCGGGTACTCCCGCTCCCACGGGTTGCTAACCGTCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGc                                         <  2:136566/150‑1 (MQ=255)                                                                                        cTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGa                                                                           <  2:403009/114‑1 (MQ=255)                                                                                        cTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGa                                                                           >  1:403009/1‑114 (MQ=255)                                                                                        atagtgtggcgccaggtggcgagactgacaaggtgggctttgtgtcgcttttgccggcctCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTg                                       >  2:7866‑M1/61‑150 (MQ=255)                                                                                                         gggACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAg                      >  2:338033/1‑150 (MQ=255)                                                                                                           gACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGACCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGGGCGGGGATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAAcc                    >  2:85217/1‑150 (MQ=255)                                                                                                                       aGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGa                             >  2:263726/1‑129 (MQ=255)                                                                                                                       aGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGa                             <  1:263726/129‑1 (MQ=255)                                                                                                                            cTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCAGAAACCTGTAGAGTATCGGCGGGAGCGGGCGTGCGTGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGc   <  1:69410/150‑1 (MQ=39)                                                                                                                             tGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATTCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGcc  >  1:416510/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                               GGCGCAACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCC  >  NC_002947/5692461‑5692734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.