New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5692608 =	30 (1.360)	5 (0.250)	5/234	NT	18.1%	intergenic (+21/‑149)	PP_4994/PP_4995	hypothetical protein/exopolysaccharide biosynthesis protein
	?	NC_002947	5692692 =	18 (0.890)					intergenic (+105/‑65)	PP_4994/PP_4995	hypothetical protein/exopolysaccharide biosynthesis protein

GCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCC  >  NC_002947/5692544‑5692835                                                                                                                                                     |                                                                                                                                                gCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAGGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAggg                                                                                                                                                <  1:235667/150‑1 (MQ=255) gCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAggg                                                                                                                                                >  1:414233/1‑150 (MQ=255)   aCCTGGTGCTTTGCCCGTGGGGACCGTTTGTCAAGTAACTGATTTTCTGCATGTGCCGGCCTTTTCGCGGGTACTCCCGCTCCCACGGGTTGCTAACCGTCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGc                                                                                                                                              <  2:136566/150‑1 (MQ=255)     atagtgtggcgccaggtggcgagactgacaaggtgggctttgtgtcgcttttgccggcctCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTg                                                                                                                                            >  2:7866‑M1/61‑150 (MQ=255)                      gggACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAg                                                                                                                           >  2:338033/1‑150 (MQ=255)                        gACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGACCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGGGCGGGGATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAAcc                                                                                                                         >  2:85217/1‑150 (MQ=255)                                    aGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGa                                                                                                                                  <  1:263726/129‑1 (MQ=255)                                    aGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGa                                                                                                                                  >  2:263726/1‑129 (MQ=255)                                         cTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCAGAAACCTGTAGAGTATCGGCGGGAGCGGGCGTGCGTGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGc                                                                                                        <  1:69410/150‑1 (MQ=39)                                          tGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATTCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGcc                                                                                                       >  1:416510/1‑150 (MQ=255)                                                           cagccccttcgcgggcatgcccgctcccgccgatactccacaggcttcagcgccggtgagcaacccgtgggagcgggcgtgcccgcgaagAGGCCGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTAt                                                                                      >  2:7866‑M2/91‑150 (MQ=255)                                                                 cttcgcgggcatgcccgctcccgccgatactccacaggcttcagcgccggtgagcaacccgtgggagcgggcgtgcccgcgaagGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCa                                                                                >  2:42832‑M2/85‑150 (MQ=255)                                                                      CGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGaaa                                                                           <  2:384050‑M1/150‑1 (MQ=255)                                                                       GGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGaaaa                                                                          <  2:234125‑M1/150‑1 (MQ=255)                                                                          catgcccgctcccgccgatactccacaggcttcagcgccggtgagcaacccgtgggagcgggcgtgcccgcgaagGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAAccc                                                                       >  2:446550‑M2/76‑150 (MQ=255)                                                                          CACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAAccc                                                                       >  1:387345‑M1/1‑150 (MQ=255)                                                                            cGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTc                                                                     <  1:362123/150‑1 (MQ=255)                                                                            cGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTc                                                                     <  1:338033/150‑1 (MQ=255)                                                                                    cccACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAg                                                             <  2:127558/150‑1 (MQ=255)                                                                                     ccACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGc                                                            >  2:552601/1‑150 (MQ=255)                                                                                     ccACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGCCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGc                                                            >  1:474176/1‑150 (MQ=255)                                                                                      cgccgatactccacaggcttcagcgccggtgagcaacccgtgggagcgggcgtgcccgcgaagGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCt                                                           <  1:446550‑M2/87‑1 (MQ=255)                                                                                                      gcgcTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGtt                                           <  1:28354/150‑1 (MQ=255)                                                                                                        ttcagcgccggtgagcaacccgtgggagcgggcgtgcccgcgaagAGGCCGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTcc                                         <  1:7866‑M2/105‑1 (MQ=255)                                                                                                          tGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTg                                       >  1:337873/1‑150 (MQ=255)                                                                                                           gAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGa                                      <  1:225027/150‑1 (MQ=255)                                                                                                             aGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATc                                    <  1:234125/150‑1 (MQ=255)                                                                                                                 tgtgGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCa                                >  2:114865/1‑150 (MQ=255)                                                                                                                 tgtgGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCa                                >  2:434278/1‑150 (MQ=255)                                                                                                                             gcggGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATgg                    <  1:114865/150‑1 (MQ=255)                                                                                                                                         aTGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACt        >  2:542057/1‑150 (MQ=255)                                                                                                                                            cccgcgaagGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCg     <  1:42832‑M2/141‑1 (MQ=255)                                                                                                                                              cgcgaagGGGCTGGCAAAAGCGACACCAAGTCCACCTTGTCAGTCTCGCCACCTGGCGCCACAATATCCCCCATGAAAACCCTCGCACGCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGcc   >  1:438927‑M2/8‑150 (MQ=255)                                                                                                                                              cgcgaagGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGcc   >  2:508390‑M2/8‑150 (MQ=255)                                                                                                                                               gcgaagGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGccc  >  1:419350‑M2/7‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                GCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCC  >  NC_002947/5692544‑5692835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.