New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4714580 =	23 (1.040)	4 (0.190)	4/248	NT	14.0%	coding (652/891 nt)	PP_4172	hypothetical protein
	?	NC_002947	4714619 =	27 (1.260)					coding (691/891 nt)	PP_4172	hypothetical protein

GGGCAACAGCGATGTGCTCCTGGGCCTGGACGACCCTGACTTGTACAACTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCGCGCAGCCTGTACCCGGTGCGTTACGGCGTCAGTGGCAACCAGCAGGTGGCCCGTGCCCTGGGTCTTG  >  NC_002947/4714474‑4714760                                                                                                                                                  |                                                                                                                                              gggCAACAGCGATGTGCTCCTGGGCCTGGACGACCCTGACTTGTACAACTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTAc                                                                                                                                           <  2:164452/150‑1 (MQ=255)     aaCAGCGATGTGCTCCTGGGCCTGGACGACCCTGACTTGTACAACTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTAc                                                                                                                                       >  2:140074/1‑150 (MQ=255)                                  cccTGACTTGTACAACTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTgg                                                                                                               <  1:108042/145‑1 (MQ=255)                                  cccTGACTTGTACAACTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTgg                                                                                                               >  2:108042/1‑145 (MQ=255)                                               aaCTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTc                                                                                             <  1:211846/150‑1 (MQ=255)                                               aaCTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTc                                                                                             >  2:226759/1‑150 (MQ=255)                                                aCTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCg                                                                                            <  1:276259/150‑1 (MQ=255)                                                     aaGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGAc                                                                                          >  1:256627/1‑147 (MQ=255)                                                     aaGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGAc                                                                                          <  2:256627/147‑1 (MQ=255)                                                     aaGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAg                                                                                       >  2:154469/1‑150 (MQ=255)                                                          tGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCtg                                                                                                                  <  2:193529/118‑1 (MQ=255)                                                          tGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCtg                                                                                                                  >  1:193529/1‑118 (MQ=255)                                                           gCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGAc                                                                                          >  1:332823/1‑141 (MQ=255)                                                           gCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGAc                                                                                          <  2:332823/141‑1 (MQ=255)                                                            cAAAAAAGCTTCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGa                                                                                <  1:23823/150‑1 (MQ=255)                                                                         gTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCcgcg                                                                   >  2:310776/1‑150 (MQ=255)                                                                          ttGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCgcgc                                                                  >  1:542428/1‑150 (MQ=255)                                                                          ttGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTGCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCgcgc                                                                  >  2:502713/1‑150 (MQ=255)                                                                               cAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCGCGCAGCCt                                                             <  1:226759/150‑1 (MQ=255)                                                                                  ttATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCGCGCAGCCTGTa                                                          >  2:564685/1‑150 (MQ=255)                                                                                  ttATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCGCGCAGCCTGTa                                                          >  1:474522/1‑150 (MQ=255)                                                                                                      tGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCGCGCAGCCTGTACCCGGTGCGTTACGGCGTCa                                      >  2:248865/1‑150 (MQ=255)                                                                                                         tCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCGCGCAGCCTGTACCCGGTGCGTTACGGCGTCAGTg                                   <  1:564685/150‑1 (MQ=255)                                                                                                         tCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACAAGTTGCTCGACCAGCCGCCGAGGCGCTGGCCGCGCAGCCTGTACCCGGTGCGTTACGGCGTCAGTg                                   >  2:17169/1‑150 (MQ=255)                                                                                                           ggccagggcgccggcgcgaacgaagccggcgttcgggccAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTc                                                                                             >  2:554118‑M2/40‑90 (MQ=255)                                                                                                           ggccagggcgccggcgcgaacgaagccggcgttcgggccAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTc                                                                                             <  1:554118‑M2/51‑1 (MQ=255)                                                                                                              cagggcgccggcgcgaacgaagccggcgttcgggccAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAg                                                                                       <  2:201910‑M2/57‑1 (MQ=255)                                                                                                              cagggcgccggcgcgaacgaagccggcgttcgggccAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAg                                                                                       >  1:201910‑M2/37‑93 (MQ=255)                                                                                                                       ggCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGt                                                                                                  <  2:76540/73‑1 (MQ=255)                                                                                                                       ggCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGt                                                                                                  >  1:76540/1‑73 (MQ=255)                                                                                                                       ggCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCGCGCAGCCTGTACCCGGTGCGTTACGGCGTCAGTGGCAACCAGCAGGTg                     <  1:140074/150‑1 (MQ=255)                                                                                                                           tcgttcgCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCGCGCAGCCTGTACCCGGTGCGTTACGGCGTCAGTGGCAACCAGCAGGTGGccc                 <  1:502713/150‑1 (MQ=255)                                                                                                                                          cccTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCGCGCAGCCTGTACCCGGTGCGTTACGGCGTCAGTGGCAACCAGCAGGTGGCCCGTGCCCTGGGTCTTg  <  2:474522/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                              GGGCAACAGCGATGTGCTCCTGGGCCTGGACGACCCTGACTTGTACAACTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCGCGCAGCCTGTACCCGGTGCGTTACGGCGTCAGTGGCAACCAGCAGGTGGCCCGTGCCCTGGGTCTTG  >  NC_002947/4714474‑4714760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.