| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5112607 = | 33 (1.070) | 7 (0.270) | 6/226 | 2.4 | 25.2% | intergenic (‑148/+118) | rluB/PP_4497 | 23S rRNA pseudouridylate synthase B/hypothetical protein |
| ? | NC_002947 | 5112712 = | 14 (0.540) | intergenic (‑253/+13) | rluB/PP_4497 | 23S rRNA pseudouridylate synthase B/hypothetical protein | |||||
GGGGAGAGGAGCCTGAGCCTCCGGTGGAGGAGGAGATCAAGGCTCAGCCCTGATTGATCTGCTGCCTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5112777‑5112607‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaagaggccagcacaGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCGTCTTCCATGGCATCCAGCTCCACCAACAGGCTACGGAAGCTGGTC > NC_002947/5112712‑5112851 GGGGAGAGGAGCCTGAGCCTCCGGTGGAGGAGGAGATCAAGGCTCAGCCCTGATTGATCTGCTGCCTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGT < 2:678912/150‑1 GAGGAGCCTGAGCCTCCGGTGGAGGAGGAGATCAAGGCTCAGCCCTGATTGATCTGCTGCCTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCG > 2:204433/1‑150 TCGCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTC > 2:103792/1‑150 GCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGAAGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCT > 2:335/1‑150 AAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTG < 1:115071/113‑1 AAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTG > 2:115071/1‑113 ACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTC < 1:335/150‑1 ttcGCGGGCAAGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGC < 2:573440/85‑1 AGCGGGCGTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCGTCTTCCATGGCATCCAGCTCCACCA < 1:103792/150‑1 AAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCGTCTTCCATGGCATCCAGCTCCACCAACAGGCTACGGAAGCT < 1:678912/150‑1 GGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCGTCTTCCATGGCATCCAGCTCCACCAACAGGCTACGGAAGCTGGTC < 1:363690/150‑1 GGGGAGAGGAGCCTGAGCCTCCGGTGGAGGAGGAGATCAAGGCTCAGCCCTGATTGATCTGCTGCCTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5112777‑5112607‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaagaggccagcacaGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCGTCTTCCATGGCATCCAGCTCCACCAACAGGCTACGGAAGCTGGTC > NC_002947/5112712‑5112851 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |