New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 280956 | 28 (0.990) | 4 (0.150) | 4/236 | NT | 12.1% | coding (85/795 nt) | fliY | cystine‑binding protein |
? | NC_002947 | = 280974 | 31 (1.150) | coding (67/795 nt) | fliY | cystine‑binding protein |
CCCCAGCTCCTTGGCCAGCAGCTCGGACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/280813‑280956 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctcAGCCAGGCTTTCGCCGGCGAGCAATTGAAGACCATCCA < NC_002947/280974‑280937 CCCCAGCTCCTTGGCCAGCAGCTCGGACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCAGCCAG > 2:243138/1‑150 CCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCAGCCAGGCTTTCGCCGGCGAGCAATTGAAGACCATCCA < 1:243138/150‑1 GCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCAGCCAGGCTTTCGCCGGCGAGCAATTGA < 1:536628/92‑1 GCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCAGCCAGGCTTTCGCCGGCGAGCAATTGA > 2:536628/1‑92 CCCCAGCTCCTTGGCCAGCAGCTCGGACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/280813‑280956 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctcAGCCAGGCTTTCGCCGGCGAGCAATTGAAGACCATCCA < NC_002947/280974‑280937 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |