New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 280956 | 28 (0.990) | 4 (0.150) | 4/236 | NT | 12.1% | coding (85/795 nt) | fliY | cystine‑binding protein |
? | NC_002947 | = 280974 | 31 (1.150) | coding (67/795 nt) | fliY | cystine‑binding protein |
GGACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGACTATAGGGTTGGCTGATTAGGCCGGGAAATACTAAAA > NC_002947/280837‑281118 | ggACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAg < 2:640975/144‑1 (MQ=255) ggACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAg > 1:640975/1‑144 (MQ=255) cTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCcag > 1:642771/1‑150 (MQ=255) ccACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCcagca > 1:447581/1‑150 (MQ=255) cACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCcagcag < 2:59403/150‑1 (MQ=255) tCGAAGCCGTGCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTCCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCaggagg < 1:717789/150‑1 (MQ=255) tccGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTCGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGCGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAg < 1:717825/149‑1 (MQ=255) ccGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGt > 2:330729/1‑150 (MQ=255) cTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCATCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTTGc < 2:523012/150‑1 (MQ=255) cTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGc < 2:34032/150‑1 (MQ=255) cGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGc < 2:447581/150‑1 (MQ=255) gTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCaga > 2:243523/1‑150 (MQ=255) cGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGtt > 2:650442/1‑100 (MQ=255) cGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGtt < 1:650442/100‑1 (MQ=255) aCGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTa < 1:330729/150‑1 (MQ=255) gatgaCGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTg > 1:630277/1‑106 (MQ=255) gatgaCGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTg < 2:630277/106‑1 (MQ=255) aCGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGtt < 1:562646/100‑1 (MQ=255) aCGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGtt > 2:562646/1‑100 (MQ=255) gCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGTGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGt > 1:338524/1‑150 (MQ=255) cTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGACTGGCGTTGAGTAGCGATTGGGCGATTAACGAGGTGTGGGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTgg < 1:505934/150‑1 (MQ=255) cTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCa < 1:182394/109‑1 (MQ=255) cTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCa > 2:182394/1‑109 (MQ=255) tGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTgagcaattgaagaccatccaggaaaaaggcgtcatcaacgtcggcctcgagggcacctacccgccattcagcttccaggacgaaaacggcaaactgaccggcttcgaagtgg < 1:243138‑M2/150‑113 (MQ=255) tCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCttgtt < 1:629727/117‑1 (MQ=255) tCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCttgtt > 2:629727/1‑117 (MQ=255) tCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGACTATAGGGt < 2:456358/147‑1 (MQ=255) tCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGACTATAGGGt > 1:456358/1‑147 (MQ=255) tCAATTGCTCGCCGGCGAAAGCCTGGCTgagcaattgaagaccatccaggaaaaaggcgtcatcaacgtcggcctcgagggcacctacccgc > 2:536628‑M2/1‑28 (MQ=255) tCAATTGCTCGCCGGCGAAAGCCTGGCTgagcaattgaagaccatccaggaaaaaggcgtcatcaacgtcggcctcgagggcacctacccgc < 1:536628‑M2/92‑65 (MQ=255) ttGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGACTATAGGGTTGGCTGATTa < 2:358335/150‑1 (MQ=255) tCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGa > 2:604080/1‑127 (MQ=255) tCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGa < 1:604080/127‑1 (MQ=255) ccGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGACTATAGGGTTGGCTGATTAGGCCggg < 1:243523/150‑1 (MQ=255) cTGGCTgagcaattgaagaccatccaggaaaaaggcgtcatcaacgtcggcctcgagggcacctacccgccattcagcttccaggacgaaaacggcaaactgaccggcttcgaagtggagctgtccgagctgctggccaaggagctgggg > 2:243138‑M2/1‑6 (MQ=255) cTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGttt < 2:405427/57‑1 (MQ=255) cTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGttt > 1:405427/1‑57 (MQ=255) | GGACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGACTATAGGGTTGGCTGATTAGGCCGGGAAATACTAAAA > NC_002947/280837‑281118 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |