New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2295553 | 20 (0.710) | 3 (0.110) | 3/236 | NT | 12.2% | intergenic (+55/‑68) | ppgL/PP_5496 | L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein |
? | NC_002947 | = 2295606 | 24 (0.890) | intergenic (+108/‑15) | ppgL/PP_5496 | L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein |
TCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2295475‑2295553 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcgACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCCTTGGGTCAAACTTACGCCGCCGAGGCCGCACGCAAAAATTCATTGCAGCAGTACCGATTATCACGCTGATCGATATCACTCGATGAACTTGAGGTCCGAGGGTGCATCCTGCTT < NC_002947/2295606‑2295460 TCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCATTGGGTCAAACTTACGCCGCCGAGGCCGCACGCAAAAA < 2:119701/150‑1 GATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCCTTGGGTCAAACTTACGCCGCC > 2:728159/1‑105 GATCAGCGTGATAATCGGTACTGCTCCAATGAATTTTTGCGTGCGGCCTCGACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCCTTGGGTCAAACTTACGCCGCC < 1:728159/105‑1 TCGACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCCTTGGGTCAAACTTACGCCGCCGAGGCCGCACGCAAAAATTCATTGCAGCAGTACCGATTATCACGCTGATCGATATCACTCGATGAACTTGAGGTCCGAGGGTGCATCCTGCTT < 1:214795/150‑1 TCGACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCCTTGGGTCAAACTTACGCCGCCGAGGCCGCACGCAAAAATTCATTGCAGCAGTACCGATTATCACGCTGATCGATATCACTCGATGAACTTGAGGTCCGAGG < 1:639018/137‑1 TCGACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCCTTGGGTCAAACTTACGCCGCCGAGGCCGCACGCAAAAATTCATTGCAGCAGTACCGATTATCACGCTGATCGATATCACTCGATGAACTTGAGGTCCGAGG > 2:639018/1‑137 TCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2295475‑2295553 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcgACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCCTTGGGTCAAACTTACGCCGCCGAGGCCGCACGCAAAAATTCATTGCAGCAGTACCGATTATCACGCTGATCGATATCACTCGATGAACTTGAGGTCCGAGGGTGCATCCTGCTT < NC_002947/2295606‑2295460 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |