New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2295553 | 20 (0.710) | 3 (0.110) | 3/236 | NT | 12.2% | intergenic (+55/‑68) | ppgL/PP_5496 | L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein |
? | NC_002947 | = 2295606 | 24 (0.890) | intergenic (+108/‑15) | ppgL/PP_5496 | L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein |
AAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTG > NC_002947/2295460‑2295746 | aaGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcga < 1:214795‑M2/150‑4 (MQ=255) gCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGccc < 2:413349/150‑1 (MQ=255) ccTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcga < 1:639018‑M2/137‑4 (MQ=255) ccTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcga > 2:639018‑M2/1‑134 (MQ=255) ggACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAAc > 2:632051/1‑150 (MQ=255) tCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAGTCTCTTCCCGGTTATTGCCGCAt > 2:670759/1‑150 (MQ=255) tAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAGGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCAttt > 1:302409/1‑150 (MQ=255) aCTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCg < 1:632051/150‑1 (MQ=255) ctgctgCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCgg < 2:411754/150‑1 (MQ=255) tgcAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGt > 1:570669/1‑150 (MQ=255) tgcAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGt > 2:253668/1‑150 (MQ=255) aaTGAATTTTTGCGTGCGGCCTCGGCGGCATAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTCCt < 1:750129/150‑1 (MQ=255) aTGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAAtctc < 1:344324/105‑1 (MQ=255) aTGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAAtctc > 2:344324/1‑105 (MQ=255) aTGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATc > 2:70819/1‑125 (MQ=255) aTGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATc < 1:70819/125‑1 (MQ=255) tttttGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAATGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcgaggccgcacgcaaaaattcattgcagcagtaccgattatcacgctgatcgatatcactcgatgaacttgaggtccga < 2:119701‑M2/150‑80 (MQ=255) tttttGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAgc < 2:8683/150‑1 (MQ=255) gtgcgGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACAACCGTCGAGGTAACGACAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGcatgcc > 1:467271/1‑150 (MQ=255) ggcggcGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcgaggccgcacgcaaaaattcattggagcagtaccgattatcacgctgatc < 1:728159‑M2/105‑52 (MQ=255) ggcggcGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcgaggccgcacgcaaaaattcattgcagcagtaccgattatcacgctgatc > 2:728159‑M2/1‑54 (MQ=255) gcggcgTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGAcag < 1:627511/150‑1 (MQ=255) gcgTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGAcagcag > 2:3326/1‑150 (MQ=255) tAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCaa < 1:3326/150‑1 (MQ=255) aGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGACCTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATACCGACAGCAGCAAgg < 2:214795/150‑1 (MQ=255) aCCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAAt > 2:397016/1‑65 (MQ=255) aCCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAAt < 1:397016/65‑1 (MQ=255) ccAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGcc > 1:654750/1‑113 (MQ=255) ccAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGcc < 2:654750/113‑1 (MQ=255) ccaccGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTg > 2:684795/1‑150 (MQ=255) | AAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTG > NC_002947/2295460‑2295746 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |