New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5509745 | 36 (1.280) | 3 (0.120) | 3/224 | NT | 8.0% | intergenic (+36/‑105) | urtA/urtB | urea ABC transporter substrate‑binding protein/urea ABC transporter permease |
? | NC_002947 | = 5509807 | 36 (1.400) | intergenic (+98/‑43) | urtA/urtB | urea ABC transporter substrate‑binding protein/urea ABC transporter permease |
AGGATGACGGCCAGTTCAGCGTGGTGTGGGAAACCGAGCAGCCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5509591‑5509745 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtgaGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCCTTGTAGGAGCGGGTTCACCC < NC_002947/5509807‑5509740 AGGATGACGGCCAGTTCAGCGTGGTGTGGGAAACCGAGCAGCCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCG > 1:253943/1‑150 CCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTC < 1:588831/91‑1 CCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTC > 2:588831/1‑91 TCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCCTTGTAGGAGCGGGTTCACCC < 1:325258/150‑1 GCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCCTTGTAGGAGCGGG < 1:44951/115‑1 GCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCCTTGTAGGAGCGGG > 2:44951/1‑115 AGGATGACGGCCAGTTCAGCGTGGTGTGGGAAACCGAGCAGCCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5509591‑5509745 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtgaGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCCTTGTAGGAGCGGGTTCACCC < NC_002947/5509807‑5509740 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |