New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5509745 | 36 (1.280) | 3 (0.120) | 3/224 | NT | 8.0% | intergenic (+36/‑105) | urtA/urtB | urea ABC transporter substrate‑binding protein/urea ABC transporter permease |
? | NC_002947 | = 5509807 | 36 (1.400) | intergenic (+98/‑43) | urtA/urtB | urea ABC transporter substrate‑binding protein/urea ABC transporter permease |
CAGCGTGGTGTGGGAAACCGAGCAGCCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGC > NC_002947/5509607‑5509893 | cAGCGTGGTGTGGGAAACCGAGCAGCCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCt < 1:152515/146‑1 (MQ=255) cAGCGTGGTGTGGGAAACCGAGCAGCCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCt > 2:152515/1‑146 (MQ=255) aaCCGAGCAGCCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAgg > 1:168445/1‑150 (MQ=255) agcCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAAc < 1:103523/150‑1 (MQ=255) agcCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAAc > 1:362073/1‑150 (MQ=255) ccGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCt > 2:702974/1‑150 (MQ=255) tGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCa < 1:702974/150‑1 (MQ=255) cGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGCGTGCATGGAGCCGAAATGTAGCACATTAACGGCTGAACGCACTCTTACGGTGAGCGCTTAGTTTTCAAACCTTGCAcc < 2:7814/150‑1 (MQ=255) aTGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCTCAGGTTTCAAACCTTGCACCGTCTCTGTGTa < 2:253943/150‑1 (MQ=255) cGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCggg > 1:522968/1‑150 (MQ=255) gTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGGGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCTCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGc < 1:714502/150‑1 (MQ=255) tCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAgcccgctcctacacagagacggtgcaaggtttgaaacctgcgcggtccttgtaggagcgggttcaccc < 1:325258‑M1/150‑69 (MQ=255) gCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCAcc > 1:657963/1‑119 (MQ=255) gCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCAcc < 2:657963/119‑1 (MQ=255) aaGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCaa < 2:522968/150‑1 (MQ=255) gCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCACGAAGAATCCAaca > 1:341438/1‑150 (MQ=255) cAGATTACGCCGTGAAGGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGAt < 2:205143/150‑1 (MQ=255) gCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAgcccgctcctacacagagacggtgcaaggtttgaaacctgcgcggtccttgtaggagcggg < 1:44951‑M1/115‑62 (MQ=255) gCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAgcccgctcctacacagagacggtgcaaggtttgaaacctgcgcggtccttgtaggagcggg > 2:44951‑M1/1‑54 (MQ=255) tAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGATGAAACCGCTCCTACAAGGACCCCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATg > 2:719505/1‑150 (MQ=255) tGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCa > 2:300853/1‑150 (MQ=255) aTGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCg > 2:528752/1‑91 (MQ=255) aTGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCg < 1:528752/91‑1 (MQ=255) aTGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGATTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCCCCCCCGAAGAATCCAACACCGATTTCCAGGCTTGCCCGCATGCTCAGACTCCt > 1:176434/1‑150 (MQ=255) ggggCTGCTTTGCAGCCCATTCGCGGGTGACCCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGc < 1:122402/150‑1 (MQ=255) tttGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACcctc > 1:579765/1‑150 (MQ=255) aGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCctgct < 2:168445/150‑1 (MQ=255) gCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGAc > 1:576631/1‑130 (MQ=255) gCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGAc < 2:576631/130‑1 (MQ=255) cccATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCtgctgc > 1:187508/1‑150 (MQ=255) cccATTCGCGGGTGAACCCGCTCATACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCaa < 2:690537/96‑1 (MQ=255) cccATTCGCGGGTGAACCCGCTCATACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCaa > 1:690537/1‑96 (MQ=255) cATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATc > 1:690260/1‑91 (MQ=255) cATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATc < 2:690260/91‑1 (MQ=255) aTTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTaa > 1:472324/1‑150 (MQ=255) ttCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATcc > 1:429413/1‑90 (MQ=255) ttCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATcc < 2:429413/90‑1 (MQ=255) gggTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCtcacccgcgaatgggctgcaaagcagccccatgcactcagttacctttcacggcgtaatctggccgcttgtcattgcccgga < 1:325258‑M2/150‑83 (MQ=255) gggTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTcc > 2:659467/1‑123 (MQ=255) gggTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTcc < 1:659467/123‑1 (MQ=255) ggTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTTCTGCTAAt > 2:155514/1‑144 (MQ=255) ggTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTTCTGCTAAt < 1:155514/144‑1 (MQ=255) gTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTg > 1:195371/1‑150 (MQ=255) gAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTCAAAGGATTGCCCGCATGCTCATACGCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGc > 1:499140/1‑150 (MQ=255) | CAGCGTGGTGTGGGAAACCGAGCAGCCGCTGCGGGCGCAGCCATGGAGCCCGTTCATTCCGGGCAATGACAAGCGGCCAGATTACGCCGTGAAAGGTAACTGAGTGCATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGC > NC_002947/5509607‑5509893 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |