New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 217935 = | 45 (1.600) | 3 (0.110) | 3/230 | NT | 7.1% | coding (23441/26049 nt) | PP_0168 | putative surface adhesion protein |
? | NC_002947 | 217993 = | 37 (1.410) | coding (23499/26049 nt) | PP_0168 | putative surface adhesion protein |
CAAGAACCTGAAGTTCGTTCCGGCCCTCAACCAGTCGGGTGCGGACAACTACGGTGGTAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCAAAGGCCTGGGTACTGGCGGCAACGGCATTACCGGCGAGGATCTGAAGACGGTC > NC_002947/217786‑218083 | catcggactgcacgttggtagtggtgctgctggagttcgcgctgccggagttggcaaagaccgtcttcagatcctcgccggtaatgccgttgccgccagtacccaggcctttgaggctggtccagacttccttggtcagccctttggact < 1:396480‑M1/1‑1 (MQ=255) cggactgcacgttggtagtggtgctgctggagttcgcgctgccggagttggcaaagaccgtcttcagatcctcgccggtaatgccgttgccgccagtacccaggcctttgaggctggtccagacttccttggtcagccctttggacTCGa < 1:732716‑M1/4‑1 (MQ=255) cTGAAGTTCGTTCCGGCCCTCAACCAGTCGGGTGCGGACAACTACGGTGGTAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATc > 1:100763/1‑150 (MQ=255) cTGAAGTTCGTTCCGGCCCTCAACCAGTCGGGTGCGGACAACTACGGTGGTAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATc > 2:469175/1‑150 (MQ=255) ttcgttcCGGCCCTCAACCAGTCGGGTGCGGACAACTACGGTGGTAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGCACGATGGCACCAACCTGGGCAGCGAAGTGAACATGAAGGGCGATATCAGCACg > 1:717487/1‑150 (MQ=255) gcggccccTTAACCAGGCGGGTGTGGACAACTACGGTGGTAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTTGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGc < 2:134427/145‑1 (MQ=255) aCCAGTCGGGTGCGGACAACTACGGTGGTAATGGTGTGGGTAACCATAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGCCAGCGAGGTGGCCATGAAGGTCGATATCTTCCCTGTCGCCGACAAACCgc > 2:310185/1‑149 (MQ=255) ggACAACTACGGTGGTAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCATCCCGGTTGCCGACAAACCGACCCTGAGCTTCgg > 1:82672/1‑150 (MQ=255) cTACGGTGGTAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAgcgc < 1:469175/150‑1 (MQ=255) ggtAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAGGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCAGGAAGGTCGATATAAGCCCGGGTGCCGACAAACCGACCCTGAGATTCGGCAGCGCCGATATc > 2:263776/1‑150 (MQ=255) tAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGa > 1:559015/1‑114 (MQ=255) tAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATAGCAGCCCGGTTGCCGa < 2:559015/114‑1 (MQ=255) aTGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGt < 2:100763/150‑1 (MQ=255) ccgtcttcagatcctcgccggtaatgccgttgccgccagtacccaggcctttgaggctggtccagacttccttggtcagccctttggacTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTc > 2:400942‑M1/90‑150 (MQ=255) ggTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGat > 1:632697/1‑141 (MQ=255) ggTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGat < 2:632697/141‑1 (MQ=255) ggTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTcc < 1:525800/150‑1 (MQ=255) gtgtGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATGAGCCCGGTTTCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCa > 2:48080/1‑150 (MQ=255) gtgtGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCa > 2:153845/1‑150 (MQ=255) gtgtGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCa > 2:729336/1‑150 (MQ=255) gtgGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCaaa < 1:544154/150‑1 (MQ=255) gtgGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCaaa < 2:688146/150‑1 (MQ=255) gggTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGcc > 2:321223/1‑103 (MQ=255) gggTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGcc < 1:321223/103‑1 (MQ=255) tAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCt > 2:204501/1‑150 (MQ=255) cAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGAcc < 1:729336/150‑1 (MQ=255) cAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGAcc > 2:446493/1‑150 (MQ=255) gAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCATCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCaa < 2:82672/150‑1 (MQ=255) aaGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAg < 2:220151/150‑1 (MQ=255) cTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGt > 2:362883/1‑85 (MQ=255) cTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGt < 1:362883/85‑1 (MQ=255) tGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGt > 1:671080/1‑150 (MQ=255) tACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTgg < 1:153845/150‑1 (MQ=255) gCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGAcc > 2:708762/1‑150 (MQ=255) cccAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGGCCAACGTGCCGATCAAGGAAGACGGGACCa > 2:418969/1‑150 (MQ=255) cAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGc < 2:671080/150‑1 (MQ=255) aagttcaagCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCaaa > 1:506289/1‑150 (MQ=255) caagCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGCTTGCGGACAAACCGACCCTGAGCTTCGGCAGCGCGGATATCGAGTCCAAAGTGCTGACCAAGGACGTCTGGACAAGCCTCAAAGGCCt > 2:40570/1‑150 (MQ=255) caggcctttgaggctggtccagacttccttggtcagccctttggacTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGt < 2:76254‑M1/60‑1 (MQ=255) caggcctttgaggctggtccagacttccttggtcagccctttggacTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGt > 1:76254‑M1/47‑106 (MQ=255) aagCCGAACAACGACACCCACCGGGGCAGCGAAGTGACCAGGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCAAAGGCCTg > 2:559144/1‑150 (MQ=255) agCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACAAGCCTCAAAGGCCTgg < 1:446493/150‑1 (MQ=255) gCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCAAAGGCCTggg < 2:506289/150‑1 (MQ=255) ccGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCAAAGGCCTGGGt > 2:620335/1‑150 (MQ=255) cGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCgg > 1:49511/1‑85 (MQ=255) cGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCgg < 2:49511/85‑1 (MQ=255) aaCGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGAc > 1:157148/1‑71 (MQ=255) aaCGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGAc < 2:157148/71‑1 (MQ=255) aCCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCAAAGGCCTGGGTACTGGCGGCAACGGCa > 1:330067/1‑150 (MQ=255) ccATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCAAAGGCCTGGGTACTGGCGGCAACGGCATTACCGGCGAGGATCTGa > 2:396480/1‑150 (MQ=255) gAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCAAAGGCCTGGGTACTGGCGGCAACGGCATTACCGGCGAGGATCTGAAGAc > 1:222687/1‑150 (MQ=255) gTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCAAAGGCCTGGGTACTGGCGGCAACGGCATTACCGGCGAGGATCTGAAGACGGTc < 1:263776/150‑1 (MQ=255) | CAAGAACCTGAAGTTCGTTCCGGCCCTCAACCAGTCGGGTGCGGACAACTACGGTGGTAATGGTGTGGGTAACCAGAAGGCTGACTACGCCCAGTTCAAGTTCAAGCCGAACGATGGCACCAACCTGGGCAGCGAAGTGACCATGAAGGTCGATATCAGCCCGGTTGCCGACAAACCGACCCTGAGCTTCGGCAGCGCCGATATCGAGTCCAAAGGGCTGACCAAGGAAGTCTGGACCAGCCTCAAAGGCCTGGGTACTGGCGGCAACGGCATTACCGGCGAGGATCTGAAGACGGTC > NC_002947/217786‑218083 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |