New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3588140 = | 37 (1.310) | 3 (0.130) | 3/206 | NT | 10.3% | intergenic (+18/‑57) | catA‑II/benE‑II | catechol 1,2‑dioxygenase/benzoate transport protein |
? | NC_002947 | 3588208 = | 21 (0.890) | coding (12/1272 nt) | benE‑II | benzoate transport protein |
GGGGAGGTGGTGTTCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGA > NC_002947/3587991‑3588288 | tcaccaacgggccggcgtaggagatcgtcgtggcaatgctgccggcgacgatggccgacacagagcagtccttgatcagcgttttcatgaagcttctcgcaaggcagcggccggcctttgtggcgggctcttgtttgggtgttggctgct < 1:122075‑M1/1‑1 (MQ=255) gAGGTGGTGTTCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCGGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTcg > 2:214913/1‑150 (MQ=255) ggtggtGTTCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTcgcg < 2:574494/150‑1 (MQ=255) acgggccggcgtaggagatcgtcgtggcaatgctgccggcgacgatggccgacacagagcagtccttgatcagcgttttcatgaagcttctcgcaaggcagcggccggcctttgtggcgggctcttgtttgggtgttggctgcTTCGCgg > 1:568174‑M1/144‑150 (MQ=255) tgtTCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCAt < 1:264940/150‑1 (MQ=255) ttCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGc > 2:502436/1‑150 (MQ=255) tcgAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGc < 2:269821/150‑1 (MQ=255) gtaggagatcgtcgtggcaatgctgccggcgacgatggccgacacagagcagtccttgatcagcgttttcatgaagcttctcgcaaggcagcggccggcctttgtggcgggctcttgtttgggtgttggctgcTTCGCGGGCATGCCCGc < 2:410682‑M1/17‑1 (MQ=255) ggATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGt > 2:745435/1‑150 (MQ=255) tcgtggcaatgctgccggcgacgatggccgacacagagcagtccttgatcagcgttttcatgaagcttctcgcaaggcagcggccggcctttgtggcgggctcttgtttgggtgttggctgcTTCGCGGGCa > 2:179868‑M1/123‑132 (MQ=255) tcgtggcaatgctgccggcgacgatggccgacacagagcagtccttgatcagcgttttcatgaagcttctcgcaaggcagcggccggcctttgtggcgggctcttgtttgggtgttggctgcTTCGCGGGCa < 1:179868‑M1/10‑1 (MQ=255) gATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTg > 1:629392/1‑150 (MQ=255) tCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCggg > 1:288893/1‑125 (MQ=255) tCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCggg < 2:288893/125‑1 (MQ=255) tCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGcc > 1:35197/1‑150 (MQ=255) cGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTcgc > 1:72249/1‑113 (MQ=255) cGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTcgc < 2:72249/113‑1 (MQ=255) gCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCgtt < 1:84872/150‑1 (MQ=255) ttCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAAGTAAAGCCTGTGCAGTCGTT‑GTTGGAg > 2:548654/1‑150 (MQ=255) ttCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATACCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTagag > 2:122075/1‑150 (MQ=255) gACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCgg < 2:35197/150‑1 (MQ=255) ccAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATg > 2:203794/1‑150 (MQ=255) acagagcagtccttgatcagcgttttcatgaagcttctcgcaaggcagcggccggcctttgtggcgggctcttgtttgggtgttggctgcTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGc < 1:594947‑M1/53‑1 (MQ=255) acagagcagtccttgatcagcgttttcatgaagcttctcgcaaggcagcggccggcctttgtggcgggctcttgtttgggtgttggctgcTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGc > 2:594947‑M1/91‑143 (MQ=255) cagagcagtccttgatcagcgttttcatgaagcttctcgcaaggcagcggccggcctttgtggcgggctcttgtttgggtgttggctgcTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGc > 1:650459‑M1/90‑150 (MQ=255) tGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCcgc < 1:502436/150‑1 (MQ=255) ccAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGtt‑gttg > 2:582962/1‑124 (MQ=255) ccAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGtt‑gttg < 1:582962/124‑1 (MQ=255) ccAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCa > 1:71178/1‑150 (MQ=255) ggCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGTCATGCCCTTTCCCACATGTGAAGCCTGTGCAGTCTTT‑GTTGGATCGGGCATGCCTGCGAAGCAGTCAacac < 2:278817/150‑1 (MQ=255) gATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTc > 1:580832/1‑104 (MQ=255) gATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTc < 2:580832/104‑1 (MQ=255) aTGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAaga < 2:629392/150‑1 (MQ=255) gcgcagcgGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGcc > 2:20767/1‑150 (MQ=255) cgcagcgGGCGGCCGCGAGCTTTGCAGGAGGCCTGATACCCCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGCGCGCGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCca < 1:548654/150‑1 (MQ=255) gcgggcggCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGCCGCCTGTGGAGTCGTTAGCCGGTG‑GTGCATAGCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACaaa < 1:203794/150‑1 (MQ=255) cgggcggCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAg < 1:225933/150‑1 (MQ=255) gAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCACCAGCATAGATCGGCCGCTg > 2:511911/1‑150 (MQ=255) ggaggCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCgtt‑gtt < 1:725549/75‑1 (MQ=255) ggaggCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCgtt‑gtt > 2:725549/1‑75 (MQ=255) gaggCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCtgtg > 2:43785/1‑63 (MQ=255) gaggCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCtgtg < 1:43785/63‑1 (MQ=255) tGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCt > 1:732570/1‑147 (MQ=255) tGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCt < 2:732570/147‑1 (MQ=255) gATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCAt < 1:214913/150‑1 (MQ=255) cACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGc > 1:678176/1‑134 (MQ=255) cACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGc < 2:678176/134‑1 (MQ=255) tGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGa < 2:71178/150‑1 (MQ=255) cTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCaa < 1:20767/150‑1 (MQ=255) tttCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGa > 2:367937/1‑150 (MQ=255) tttCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGa > 2:315456/1‑150 (MQ=255) | GGGGAGGTGGTGTTCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTT‑GTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGA > NC_002947/3587991‑3588288 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |