New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5078805 = | 34 (1.210) | 3 (0.110) | 3/238 | NT | 8.6% | intergenic (‑2/+395) | mgtE/PP_t56 | magnesium transporter/tRNA‑Arg |
? | NC_002947 | 5078837 = | 31 (1.140) | intergenic (‑34/+363) | mgtE/PP_t56 | magnesium transporter/tRNA‑Arg |
CAGGTTTTCCACCAGGTCGTTGTGCGCGCCTTCCTGGCGATGGGTCAGGTCTTCGACCATGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCATGGTGGTTTTCCACAAGCCCCGGCGGGGCTGACGGG > NC_002947/5078660‑5078938 | cAGGTTTTCCACCAGGTCGTTGTGCGCGCCTTCCTGGCGATGGGTCAGGTCTTCGACCATGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGa > 1:22559/1‑150 (MQ=255) cAGGTTTTCCACCAGGTCGTTGTGCGCGCCTTCCTGGCGATGGGTCAGGTCTTCGACCATGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCCTTTTTAACTTCTACTTCGGTCATAGGCGa > 2:448738/1‑150 (MQ=255) accaGGTCGTTGTGCGCGCCTTCCTGGCGATGGGTCAGGTCTTCGACCATGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAactccactcc > 1:385962/1‑150 (MQ=255) accaGGTCGTTGTGCGCGCCTTCCTGGCGATGGGTCAGGTCTTCGAAAAAGTGCACTCGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAactccactcc > 2:558852/1‑150 (MQ=255) gcgcCTTCCTGGCGATGGGTCAGGTCTTCGACCATGCGCTGACGCTGCAGCAGTTCGACCACCTGCGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACg > 2:325199/1‑150 (MQ=255) gtatgattgcgcccgtcagccccgccggggcttgtggaaaaccaccatggacttacccagtagttactcgctaacacgattcatacagaaagatctgaccgattgattccctcGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAggg > 1:723047‑M1/114‑150 (MQ=255) ggCGATGGGTCAGGTCTTCGACCATGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGaat < 1:325199/150‑1 (MQ=255) gTCAGGTCTTCGACCATGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGt > 2:367366/1‑150 (MQ=255) gTCTTCGACCATGCGCTGACGCTGCGGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAggg < 2:250392/134‑1 (MQ=255) gTCTTCGACCATGCGCTGACGCTGCGGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAggg > 1:250392/1‑134 (MQ=255) gTCTTCGACCATGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGAt < 1:191463/150‑1 (MQ=255) cccgccggggcttgtggaaaaccaccatggacttacccagtagttactcgctaacacgattcatacagaaagatctgaccgattgattccctcGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAgg > 2:194394‑M1/94‑129 (MQ=255) cccgccggggcttgtggaaaaccaccatggacttacccagtagttactcgctaacacgattcatacagaaagatctgaccgattgattccctcGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAgg < 1:194394‑M1/36‑1 (MQ=255) aTGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAgg < 2:207018/123‑1 (MQ=255) aTGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAgg > 1:207018/1‑123 (MQ=255) tGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATg > 1:697089/1‑150 (MQ=255) gACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCgt < 2:507112/150‑1 (MQ=255) aCGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCgtg < 2:22559/150‑1 (MQ=255) cTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTa < 2:375077/150‑1 (MQ=255) cTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTa < 1:179001/150‑1 (MQ=255) agcagTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGa < 1:558852/150‑1 (MQ=255) gcagTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCttt < 2:535009/128‑1 (MQ=255) gcagTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCttt > 1:535009/1‑128 (MQ=255) ttCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTa > 1:701868/1‑129 (MQ=255) ttCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTa < 2:701868/129‑1 (MQ=255) caccTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTgg > 2:445009/1‑150 (MQ=255) ccTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGt > 2:737755/1‑150 (MQ=255) ccTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGt < 1:367366/150‑1 (MQ=255) ctgctccAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTa > 2:741169/6‑150 (MQ=255) aGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCATCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCAt > 2:246717/1‑150 (MQ=255) ggCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCCCTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCAtg < 1:448738/150‑1 (MQ=255) gATCCTGCAGGCTTTCTTGCGCTTTTTTACCTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCAtggtg > 1:301662/1‑150 (MQ=255) tGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCATGGTGGtttt < 1:737755/150‑1 (MQ=255) tGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCATGGTGGtttt > 2:618893/1‑150 (MQ=255) gCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCATGGTGGTTTTCcaca > 2:437121/1‑150 (MQ=255) tGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCATGGTGGTTTTCCACAAGCCCcg > 1:710204/1‑150 (MQ=255) gcgcTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCATGGTGGTTTTCCACAAGCCCcgg > 1:375657/1‑150 (MQ=255) ttttttAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCATGGTGGTTTTCCACAAGCCCCGGCggg < 1:741169/150‑1 (MQ=255) ttCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCATGGTGGTTTTCCACAAGCCCCGGCGGGGCTGACggg > 1:549978/1‑150 (MQ=255) | CAGGTTTTCCACCAGGTCGTTGTGCGCGCCTTCCTGGCGATGGGTCAGGTCTTCGACCATGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCATGGTGGTTTTCCACAAGCCCCGGCGGGGCTGACGGG > NC_002947/5078660‑5078938 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |