New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3817397 | 17 (0.590) | 8 (0.290) | 6/256 | 2.7 | 32.7% | coding (337/2364 nt) | bamA‑II | outer membrane protein assembly factor |
? | NC_002947 | = 3817408 | NA (NA) | coding (348/2364 nt) | bamA‑II | outer membrane protein assembly factor |
CGGGTTCTTCCAGGACATCCAGTTGAGCCGCGATGGCAATGTGCTGATCATCAACGTGGTCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3817264‑3817397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccCGATTGCTTCAGGCCCTTCATCAGGTCTTCGGTGCTGATCGCCTTGTTGCCTTCAATCTCGATGCTCGACACCGACGGGCGCTCGACCACGTTGATGATCAGCACATTGCCATCGCGGCTCAACTGGATGTCCTGGAAGAACCCGGTCT < NC_002947/3817408‑3817260 CGGGTTCTTCCAGGACATCCAGTTGAGCCGCGATGGCAATGTGCTGATCATCAACGTGGTCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGCCACGCATTGCTTCAGGCCC < 1:24932/150‑1 TTCCAGGACATCCAGTTGAGCCGCGATGGCAATGTGCTGATCATCAACGTGGTCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCCGATTGCTTCAGGCCC > 1:248370/1‑143 TTCCAGGACATCCAGTTGAGCCGCGATGGCAATGTGCTGATCATCAACGTGGTCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCCGATTGCTTCAGGCCC < 2:248370/143‑1 TCCAGGACATCCAGTTGAGCCGCGATGGCAATGTGCTGATCATCAACGTGGTCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCCGATTGCTTCAGGCCCTTCATCAG < 1:259726/150‑1 AACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCCGATTGCTTCAGGCCCT < 1:453857/54‑1 AACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCCGATTGCTTCAGGCCCT > 2:453857/1‑54 AAGGCGATCAGCACCGAAGACCTGATGAAGGGCCCGATTGCTTCAGGCCCT < 1:295765/51‑1 AAGGCGATCAGCACCGAAGACCTGATGAAGGGCCCGATTGCTTCAGGCCCT > 2:295765/1‑51 GGCCCGATTGCTTCAGGCCCTTCATCAGGTCTTCGGTGCTGATCGCCTTGTTGCCTTCAATCTCGATGCTCGACACCGACGGGCGCTCGACCACGTTGATGATCAGCACATTGCCATCGCGGCTCAACTG > 1:325669/1‑130 GGCCCGATTGCTTCAGGCCCTTCATCAGGTCTTCGGTGCTGATCGCCTTGTTGCCTTCAATCTCGATGCTCGACACCGACGGGCGCTCGACCACGTTGATGATCAGCACATTGCCATCGCGGCTCAACTG < 2:325669/130‑1 GCCCGATTGCTTCAGGCCCTTCATCAGGTCTTCGGTGCTGATCGCCTTGTTGCCTTCAATCTCGATGCTCGACACCGACGGGCGCTCGACCACGTTGATGATCAGCACATTGCCATCGCGGC < 1:607571/122‑1 GCCCGATTGCTTCAGGCCCTTCATCAGGTCTTCGGTGCTGATCGCCTTGTTGCCTTCAATCTCGATGCTCGACACCGACGGGCGCTCGACCACGTTGATGATCAGCACATTGCCATCGCGGC > 2:607571/1‑122 CCCGATTGCTTCAGGCCCTTCATCAGGTCTTCGGTGCTGATCGCCTTGTTGCCTTCAATCTCGATGCTCGACACCGACGGGCGCTCGACCACGTTGATGATCAGCACATTGCCATCGCGGCTCAACTGGATGTCCTGGAAGAACCCGGTC < 1:403285/150‑1 CCGATTGCTTCAGGCCCTTCATCAGGTCTTCGGTGCTGATCGCCTTGTTGCCTTCAATCTCGATGCTCGACACCGACGGGCGCTCGACCACGTTGATGATCAGCACATTGCCATCGCGGCTCAACTGGATGTCCTGGAAGAACCCGGTCT > 1:651835/1‑150 CCGATTGCTTCAGGCCCTTCATCAGGTCTTCGGTGCTGATCGCCTTGTTGCCTTCAATCTCGATGCTCGACACCGACGGGCGCTCGACCACGTTGATGATCAGCACATTGCCATCGCGGCTCAACTGGATGTCCTGGAAGAACCCGGTCT < 2:11320/150‑1 CGGGTTCTTCCAGGACATCCAGTTGAGCCGCGATGGCAATGTGCTGATCATCAACGTGGTCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3817264‑3817397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccCGATTGCTTCAGGCCCTTCATCAGGTCTTCGGTGCTGATCGCCTTGTTGCCTTCAATCTCGATGCTCGACACCGACGGGCGCTCGACCACGTTGATGATCAGCACATTGCCATCGCGGCTCAACTGGATGTCCTGGAAGAACCCGGTCT < NC_002947/3817408‑3817260 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |