New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3817397 | 17 (0.590) | 8 (0.290) | 6/256 | 2.7 | 32.7% | coding (337/2364 nt) | bamA‑II | outer membrane protein assembly factor |
? | NC_002947 | = 3817408 | NA (NA) | coding (348/2364 nt) | bamA‑II | outer membrane protein assembly factor |
TCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGCCGCAGCCGCGCAACCGTGTGGCGCTGAAGA > NC_002947/3817323‑3817556 | tCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAgc > 2:693574/1‑150 (MQ=34) gTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGt < 1:693574/150‑1 (MQ=35) aTCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGc > 1:591851/1‑150 (MQ=38) aaGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGAc > 1:246556/1‑150 (MQ=39) gCGATCAGCACCGCAGACCTGATGAAGGGCCCGAAGCAATCGGGCCTGGCCGAAGGCGAGACCTTCCAGCGTGCCACCCTCCAAGCTGTACGTACCCAGCCGCAGCGCCAGTACGCGGCCCCAGCCCCCCACTCGGCACACGCCGACGcc > 2:97734/1‑150 (MQ=11) ccGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGc > 1:528625/1‑150 (MQ=255) ccGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGc > 2:378782/1‑150 (MQ=255) cGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAggtgg > 1:571109/1‑146 (MQ=255) cGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAggtgg < 2:571109/146‑1 (MQ=255) aCCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCTGAGGTCGACGCCGAGGTGGTGCCGCAGc > 2:721651/1‑150 (MQ=255) cTGATGAAGGGCCTGAAGCAATCGGGCCTAGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCAGAGGTCGACGCCGAGGTGGTGCCGCAGCcg > 2:4354/1‑150 (MQ=255) aGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTAc > 2:459065/1‑89 (MQ=40) aGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTAc < 1:459065/89‑1 (MQ=40) gggCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAgg > 2:184871/1‑99 (MQ=38) gggCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAgg < 1:184871/99‑1 (MQ=38) gCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGCCGCAGCCGCGCAACCgtg > 1:554355/1‑150 (MQ=255) gCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTCCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAAGTGGTGCCGCAGCCGCGCAACCgtg > 1:713057/1‑150 (MQ=255) gAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGCCGCAGCCGCGCAACCGTGTGgc < 2:591851/150‑1 (MQ=255) aaGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGCCGCAGCCGCGCAACCGTGTGgcg > 1:653326/1‑150 (MQ=255) gCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCTGAGGCCGACGCCGAGGTGGTGCCGCAGCCGCGCAACCGTGTGGCGCt < 1:721651/150‑1 (MQ=255) cGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGCCGCAGCCGCGCAACCGTGTGGCGCTGaaga < 2:471028/150‑1 (MQ=255) | TCGAGCGCCCGTCGGTGTCGAGCATCGAGATTGAAGGCAACAAGGCGATCAGCACCGAAGACCTGATGAAGGGCCTGAAGCAATCGGGCCTGGCCGAAGGCGAGATCTTCCAGCGTGCCACCCTCGAAGGTGTGCGTAACGAGCTGCAGCGCCAGTACGTGGCCCAAGGCCGCTACTCGGCCGAGGTCGACGCCGAGGTGGTGCCGCAGCCGCGCAACCGTGTGGCGCTGAAGA > NC_002947/3817323‑3817556 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |