New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 883834 = | 11 (0.380) | 4 (0.180) | 4/200 | 2.7 | 49.0% | intergenic (+69/‑259) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
? | NC_002947 | 883908 = | 0 (0.000) | intergenic (+143/‑185) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
CGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGG > NC_002947/883688‑883906 | cGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCg > 2:361826/1‑150 (MQ=255) tGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGc < 2:625637/150‑1 (MQ=255) cGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGt < 1:361826/150‑1 (MQ=255) ccgttaacgctgcgcatttgaagatgatgggcgcaataggcgcggaaaagactgcgacaaaaagcaacatggctgatggacaggggctggggcgggggtttggagaggtattcaggaggttgattgccttgCCCGGc > 1:368190‑M1/132‑137 (MQ=255) ccgttaacgctgcgcatttgaagatgatgggcgcaataggcgcggaaaagactgcgacaaaaagcaacatggctgatggacaggggctggggcgggggtttggagaggtattcaggaggttgattgccttgCCCGGc < 2:368190‑M1/6‑1 (MQ=255) ttCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAAc < 1:650767/150‑1 (MQ=255) gTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGc < 2:483188/150‑1 (MQ=255) ggCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCt < 2:347612/149‑1 (MQ=255) gCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTc < 2:565168/150‑1 (MQ=255) gCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTc < 2:497144/150‑1 (MQ=255) gCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCCTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTc < 1:232999/150‑1 (MQ=255) aggcgcggaaaagactgcgacaaaaagcaacatggctgatggacaggggctggggcgggggtttggagaggtattcaggaggttgattgccttgCCCGGCCTCTTCGCGGGt < 2:224630‑M1/18‑1 (MQ=255) aggcgcggaaaagactgcgacaaaaagcaacatggctgatggacaggggctggggcgggggtttggagaggtattcaggaggttgattgccttgCCCGGCCTCTTCGCGGGt > 1:224630‑M1/95‑112 (MQ=255) tCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAaga > 2:314730/1‑150 (MQ=255) aTTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCgg < 1:314730/150‑1 (MQ=255) gacaaaaagcaacatggctgatggacaggggctggggcgggggtttggagaggtattcaggaggttgattgccttgCCCGGCCTCTTCGCgg < 1:73558‑M1/16‑1 (MQ=255) gacaaaaagcaacatggctgatggacaggggctggggcgggggtttggagaggtattcaggaggttgattgccttgCCCGGCCTCTTCGCgg > 2:73558‑M1/77‑92 (MQ=255) gcaacatggctgatggacaggggctggggcgggggtttggagaggtattcaggaggttgattgccttgCCCGGCCTCTTCGCGGGTGAACCCGc > 2:337833‑M1/69‑94 (MQ=255) gcaacatggctgatggacaggggctggggcgggggtttggagaggtattcaggaggttgattgccttgCCCGGCCTCTTCGCGGGTGAACCCGc < 1:337833‑M1/26‑1 (MQ=255) gggctggggcgggggtttggagaggtattcaggaggttgattgccttgCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 1:552592‑M1/52‑1 (MQ=255) gggctggggcgggggtttggagaggtattcaggaggttgattgccttgCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg > 2:552592‑M1/49‑100 (MQ=255) aggaggttgattgccttgCCCGGCCTCTTCGCGGGTGAACCCGc < 1:68158‑M1/26‑1 (MQ=255) aggaggttgattgccttgCCCGGCCTCTTCGCGGGTGAACCCGc > 2:68158‑M1/19‑44 (MQ=255) ggaggttgattgccttgCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGa < 1:65981‑M1/48‑1 (MQ=255) ggaggttgattgccttgCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGa > 2:65981‑M1/18‑65 (MQ=255) | CGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGG > NC_002947/883688‑883906 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |