New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 883834 = | 11 (0.380) | 4 (0.180) | 4/200 | 2.7 | 49.0% | intergenic (+69/‑259) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
? | NC_002947 | 883908 = | 0 (0.000) | intergenic (+143/‑185) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
CTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAACGG > NC_002947/883840‑884038 | CTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAAcctcc > 1:707567‑M1/1‑85 (MQ=255) CTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAAcctcc < 2:707567‑M1/85‑1 (MQ=255) ccgctcctaccgcggaacctgtaggagcgggttcacccgcgaagaggccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGccc < 1:552592‑M2/48‑1 (MQ=255) ccgctcctaccgcggaacctgtaggagcgggttcacccgcgaagaggccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGccc > 2:552592‑M2/53‑100 (MQ=255) tcctaccgcggaacctgtaggagcgggttcacccgcgaagaggccgggCAAGGCAATCAAcctcc < 1:65981‑M2/17‑1 (MQ=255) tcctaccgcggaacctgtaggagcgggttcacccgcgaagaggccgggCAAGGCAATCAAcctcc > 2:65981‑M2/49‑65 (MQ=255) CTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCca < 1:526242‑M1/150‑1 (MQ=255) gcgggttcacccgcgaagaggccgggCAAGGCAATCAAcctcct < 1:68158‑M2/18‑1 (MQ=255) gcgggttcacccgcgaagaggccgggCAAGGCAATCAAcctcct > 2:68158‑M2/27‑44 (MQ=255) gcgggttcacccgcgaagaggccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGc < 1:337833‑M2/68‑1 (MQ=255) gcgggttcacccgcgaagaggccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGc > 2:337833‑M2/27‑94 (MQ=255) acccgcgaagaggccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCt > 1:224630‑M2/19‑112 (MQ=255) acccgcgaagaggccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCt < 2:224630‑M2/94‑1 (MQ=255) ccgcgaagaggccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTc > 2:73558‑M2/17‑92 (MQ=255) ccgcgaagaggccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTc < 1:73558‑M2/76‑1 (MQ=255) gccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAACgg < 2:368190‑M2/131‑1 (MQ=255) gccgggCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAACgg > 1:368190‑M2/7‑137 (MQ=255) | CTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATGCGCAGCGTTAACGG > NC_002947/883840‑884038 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |